NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	KEC58_RS01930	Genome accession	NZ_CP073684
Coordinates	387668..388120 (-)	Length	150 a.a.
NCBI ID	WP_238087699.1	Uniprot ID	-
Organism	Photobacterium damselae strain Pdd1605
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 382668..393120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KEC58_RS01910 (KEC58_01910)	coaE	383013..383615 (-)	603	WP_151182736.1	dephospho-CoA kinase	-
KEC58_RS01915 (KEC58_01915)	pilD	383617..384495 (-)	879	WP_106338474.1	A24 family peptidase	Machinery gene
KEC58_RS01920 (KEC58_01920)	pilC	384678..385904 (-)	1227	WP_238087697.1	type II secretion system F family protein	Machinery gene
KEC58_RS01925 (KEC58_01925)	pilB	385970..387661 (-)	1692	WP_284632385.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KEC58_RS01930 (KEC58_01930)	pilA	387668..388120 (-)	453	WP_238087699.1	pilin	Machinery gene
KEC58_RS01935 (KEC58_01935)	ampD	388507..389085 (+)	579	WP_069531889.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
KEC58_RS01940 (KEC58_01940)	pdhR	389445..390218 (+)	774	WP_005297609.1	pyruvate dehydrogenase complex transcriptional repressor PdhR	-
KEC58_RS01945 (KEC58_01945)	aceE	390299..392959 (+)	2661	WP_068945542.1	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	-

Sequence

Protein

Download Length: 150 a.a. Molecular weight: 15351.52 Da Isoelectric Point: 9.0401

                                >NTDB_id=559949 KEC58_RS01930 WP_238087699.1 387668..388120(-) (pilA) [Photobacterium damselae strain Pdd1605]

MKGQKGFTLIELMIVVAVIGVLAAIAIPQYQRYVAKAEVASALATMSGVKTNVEAYTVENGQFPDGASAATSLGVPSTEV

GTIALSRTGTTDGGSIIFKFYSTASAGVSSFVSEKSFKLTRTANGGWKCSTGGATGATDIDSALLPKNCR

Nucleotide

Download Length: 453 bp

                                >NTDB_id=559949 KEC58_RS01930 WP_238087699.1 387668..388120(-) (pilA) [Photobacterium damselae strain Pdd1605]

ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATCGTAGTGGCGGTTATTGGTGTACTAGCAGCAATCGCTAT

TCCACAATATCAAAGATATGTAGCCAAAGCTGAGGTTGCATCTGCTTTAGCTACAATGTCGGGAGTAAAAACAAATGTTG

AAGCATATACAGTTGAAAATGGTCAATTTCCTGATGGCGCCAGCGCAGCAACTAGTTTAGGCGTACCAAGTACAGAAGTT

GGTACAATTGCATTATCAAGAACAGGTACCACCGACGGAGGTTCAATTATTTTTAAATTTTATTCTACAGCTTCTGCCGG

CGTAAGTTCATTCGTATCAGAAAAATCATTCAAACTAACAAGAACCGCCAACGGTGGGTGGAAATGTTCAACTGGCGGAG

CTACAGGAGCTACAGATATAGATTCTGCATTACTTCCTAAAAATTGCCGCTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-150)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Pseudomonas aeruginosa PAK	45.342	100	0.487
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	46.753	100	0.48
pilA	Vibrio cholerae strain A1552	46.753	100	0.48
pilA	Vibrio cholerae C6706	46.753	100	0.48
pilA/pilA1	Eikenella corrodens VA1	35.976	100	0.393
pilA	Acinetobacter baumannii strain A118	39.597	99.333	0.393
pilA2	Legionella pneumophila str. Paris	37.748	100	0.38
pilE	Neisseria gonorrhoeae strain FA1090	34.356	100	0.373
comP	Acinetobacter baylyi ADP1	35	100	0.373
pilA2	Legionella pneumophila strain ERS1305867	37.086	100	0.373
pilA/pilAII	Pseudomonas stutzeri DSM 10701	37.415	98	0.367
pilA/pilAI	Pseudomonas stutzeri DSM 10701	35.714	100	0.367

Detailed information NTG0559949