Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KEC58_RS01915 Genome accession   NZ_CP073684
Coordinates   383617..384495 (-) Length   292 a.a.
NCBI ID   WP_106338474.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd1605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378617..389495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC58_RS01895 (KEC58_01895) mutT 381356..381778 (-) 423 WP_068968360.1 8-oxo-dGTP diphosphatase MutT -
  KEC58_RS01900 (KEC58_01900) yacG 381990..382199 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  KEC58_RS01905 (KEC58_01905) zapD 382208..382945 (-) 738 WP_005297594.1 cell division protein ZapD -
  KEC58_RS01910 (KEC58_01910) coaE 383013..383615 (-) 603 WP_151182736.1 dephospho-CoA kinase -
  KEC58_RS01915 (KEC58_01915) pilD 383617..384495 (-) 879 WP_106338474.1 A24 family peptidase Machinery gene
  KEC58_RS01920 (KEC58_01920) pilC 384678..385904 (-) 1227 WP_238087697.1 type II secretion system F family protein Machinery gene
  KEC58_RS01925 (KEC58_01925) pilB 385970..387661 (-) 1692 WP_284632385.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KEC58_RS01930 (KEC58_01930) pilA 387668..388120 (-) 453 WP_238087699.1 pilin Machinery gene
  KEC58_RS01935 (KEC58_01935) ampD 388507..389085 (+) 579 WP_069531889.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32529.06 Da        Isoelectric Point: 8.2918

>NTDB_id=559946 KEC58_RS01915 WP_106338474.1 383617..384495(-) (pilD) [Photobacterium damselae strain Pdd1605]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHAPISRRYPMIELLTAALCGTVAILFPPTWWAVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWISLLWGHSIITWYVSNILGM

Nucleotide


Download         Length: 879 bp        

>NTDB_id=559946 KEC58_RS01915 WP_106338474.1 383617..384495(-) (pilD) [Photobacterium damselae strain Pdd1605]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATCGAAGCGTTTCCAGATTTAATCA
AAGCCGATGCGAAGCTAAATACCGACACATTTAATTTAAGCGTGCCGCGTTCTCGTTGTCCTCACTGTGGTCATCTCATT
AGTGCTGTAGAAAATATCCCTGTTATTAGTTGGCTGGTATTAAAAGGGAAGTGTAAATCTTGTCACGCACCGATTAGCCG
ACGTTACCCGATGATTGAACTGTTAACTGCAGCATTGTGTGGTACGGTTGCGATCCTATTTCCGCCAACTTGGTGGGCGG
TTGCAGTAATCTTTTTCACTTTCGCCTTAATTGCTCTGACTTTTATCGATATTGATAAGATGCTACTGCCTGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTATCGCTACAAGATTCTGTGATTGG
TGCAATTGCGGGTTATCTCTGTTTGTGGAGCGTCTTTTGGATCTTTAAATTATTAACCAAAAAAGACGGTATGGGTTATG
GCGACTTTAAACTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATGTTGCCTGTTGTGGTTCTGCTATCCTCTCTT
GCCGGGGCGATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGCCCTTATCT
TGCGATTGCAGGCTGGATCAGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

65.753

100

0.658
  pilD Vibrio cholerae strain A1552

62.457

100

0.627
  pilD Acinetobacter nosocomialis M2

52.045

92.123

0.479
  pilD Acinetobacter baumannii D1279779

52.045

92.123

0.479
  pilD Neisseria gonorrhoeae MS11

47.842

95.205

0.455