Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KEC58_RS01920 Genome accession   NZ_CP073684
Coordinates   384678..385904 (-) Length   408 a.a.
NCBI ID   WP_238087697.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd1605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379678..390904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC58_RS01895 (KEC58_01895) mutT 381356..381778 (-) 423 WP_068968360.1 8-oxo-dGTP diphosphatase MutT -
  KEC58_RS01900 (KEC58_01900) yacG 381990..382199 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  KEC58_RS01905 (KEC58_01905) zapD 382208..382945 (-) 738 WP_005297594.1 cell division protein ZapD -
  KEC58_RS01910 (KEC58_01910) coaE 383013..383615 (-) 603 WP_151182736.1 dephospho-CoA kinase -
  KEC58_RS01915 (KEC58_01915) pilD 383617..384495 (-) 879 WP_106338474.1 A24 family peptidase Machinery gene
  KEC58_RS01920 (KEC58_01920) pilC 384678..385904 (-) 1227 WP_238087697.1 type II secretion system F family protein Machinery gene
  KEC58_RS01925 (KEC58_01925) pilB 385970..387661 (-) 1692 WP_284632385.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KEC58_RS01930 (KEC58_01930) pilA 387668..388120 (-) 453 WP_238087699.1 pilin Machinery gene
  KEC58_RS01935 (KEC58_01935) ampD 388507..389085 (+) 579 WP_069531889.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KEC58_RS01940 (KEC58_01940) pdhR 389445..390218 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45043.18 Da        Isoelectric Point: 10.0330

>NTDB_id=559947 KEC58_RS01920 WP_238087697.1 384678..385904(-) (pilC) [Photobacterium damselae strain Pdd1605]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKNSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=559947 KEC58_RS01920 WP_238087697.1 384678..385904(-) (pilC) [Photobacterium damselae strain Pdd1605]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGAGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACTGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ACCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAACAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGCGCAGTATT
AACTCAGGTTAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTACGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGGATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTTGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCCCTACTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGTAACTTACATATAGAAGAGGCCATTATGGAAGCGCATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGATGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTAATCATCATTGTGCTTGGCGTTCTGATCGGCGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.25

98.039

0.542
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373