Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | J5X98_RS25480 | Genome accession | NZ_CP072600 |
| Coordinates | 5908139..5909254 (+) | Length | 371 a.a. |
| NCBI ID | WP_223047797.1 | Uniprot ID | - |
| Organism | Leptothermofonsia sichuanensis E412 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5903139..5914254
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5X98_RS25470 (J5X98_25455) | grpE | 5904669..5905394 (-) | 726 | WP_239033230.1 | nucleotide exchange factor GrpE | - |
| J5X98_RS25475 (J5X98_25460) | pilB/pilB1 | 5905972..5907966 (+) | 1995 | WP_223047796.1 | GspE/PulE family protein | Machinery gene |
| J5X98_RS25480 (J5X98_25465) | pilT | 5908139..5909254 (+) | 1116 | WP_223047797.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| J5X98_RS25485 (J5X98_25470) | - | 5909405..5910628 (+) | 1224 | WP_223047798.1 | type II secretion system F family protein | - |
| J5X98_RS25490 (J5X98_25475) | - | 5910633..5911256 (+) | 624 | WP_223047799.1 | hypothetical protein | - |
| J5X98_RS25495 (J5X98_25480) | - | 5911346..5911498 (+) | 153 | WP_223047800.1 | hypothetical protein | - |
| J5X98_RS25500 (J5X98_25485) | - | 5911648..5912604 (+) | 957 | WP_223047801.1 | orange carotenoid-binding protein | - |
| J5X98_RS25505 (J5X98_25490) | scpB | 5913168..5913656 (-) | 489 | WP_223047802.1 | SMC-Scp complex subunit ScpB | - |
Sequence
Protein
Download Length: 371 a.a. Molecular weight: 40807.95 Da Isoelectric Point: 6.6137
>NTDB_id=554512 J5X98_RS25480 WP_223047797.1 5908139..5909254(+) (pilT) [Leptothermofonsia sichuanensis E412]
MELMIEDLMEQLIEMGGSDLHLTAGLPPYFRISGHLQPIGDQALTAEECQRLIFSMLNNTQRKNLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPNFDKLGLPDVVREMSEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILTI
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALRAALREDPDIILVGEMRDLETISLAISAAETGHLVFATLHTSSAAQTVD
RMIDVFPAERQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMIVTPAISNLIREGKTAQIYSAIQTGGKLGM
QTLEKVLSDQYKAGLITFESAMSKTSRPDELQRLIGGSPAGAAQAGMAARH
MELMIEDLMEQLIEMGGSDLHLTAGLPPYFRISGHLQPIGDQALTAEECQRLIFSMLNNTQRKNLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPNFDKLGLPDVVREMSEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILTI
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALRAALREDPDIILVGEMRDLETISLAISAAETGHLVFATLHTSSAAQTVD
RMIDVFPAERQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMIVTPAISNLIREGKTAQIYSAIQTGGKLGM
QTLEKVLSDQYKAGLITFESAMSKTSRPDELQRLIGGSPAGAAQAGMAARH
Nucleotide
Download Length: 1116 bp
>NTDB_id=554512 J5X98_RS25480 WP_223047797.1 5908139..5909254(+) (pilT) [Leptothermofonsia sichuanensis E412]
ATGGAGTTAATGATCGAAGACCTGATGGAGCAGCTAATCGAAATGGGAGGCTCCGACCTGCACCTGACAGCAGGACTTCC
TCCGTACTTCCGAATCAGTGGTCACCTGCAACCAATCGGCGATCAGGCACTCACGGCTGAAGAATGCCAGAGACTTATTT
TCAGTATGCTGAACAACACTCAGCGCAAAAATCTGGAACAAAACTGGGAACTGGACTGCTCCTATGGTGTCAGAGGATTA
GCCCGGTTCCGCGTCAACGTTTATAAAGACCGGGGTACCTACGCCGCCTGTCTGCGAGCACTCAGTTCCAAAATTCCCAA
CTTTGACAAGCTGGGGCTTCCAGATGTTGTGCGGGAAATGTCCGAAAAGCCAAGAGGATTGATTCTGGTAACTGGACCGA
CCGGCTCAGGAAAAACCACCACGCTGGCGGCCATGATTGACTTGATCAATCGCACGCGAGCAGAGCACATCCTTACCATT
GAAGACCCGATTGAGTTTGTTTATGAGCCGATCAAGAGTCTGGTCCACCAGCGCCAACTGGGAGAAGATACCAAGAGCTT
TGCAAATGCGCTGAGAGCCGCGCTGCGGGAAGATCCAGACATTATTCTGGTGGGTGAGATGCGTGACCTGGAAACCATCT
CGCTGGCAATTTCTGCAGCGGAAACAGGACACCTCGTCTTTGCCACTCTGCACACCAGTTCAGCGGCTCAGACCGTTGAC
CGGATGATTGATGTGTTCCCGGCTGAGCGGCAAACCCAGGTGAGGGTTCAGCTTTCCAACTCGCTGGTAGCCGTCTTCAG
CCAGACACTGGTTCCCAAGAAAAATCCGAAACCAGGTGAGTACGGTCGGGTCATGGCTCAGGAAATCATGATTGTAACCC
CTGCTATTTCTAACTTAATTCGGGAAGGTAAAACAGCTCAAATTTACTCTGCCATTCAGACGGGGGGTAAGTTAGGGATG
CAGACGCTGGAAAAAGTTCTGTCCGATCAGTACAAAGCTGGATTGATTACCTTTGAATCAGCCATGTCCAAAACGTCCCG
TCCAGATGAACTCCAGCGCCTGATCGGGGGTTCTCCTGCAGGAGCCGCTCAGGCAGGCATGGCAGCTCGCCATTAA
ATGGAGTTAATGATCGAAGACCTGATGGAGCAGCTAATCGAAATGGGAGGCTCCGACCTGCACCTGACAGCAGGACTTCC
TCCGTACTTCCGAATCAGTGGTCACCTGCAACCAATCGGCGATCAGGCACTCACGGCTGAAGAATGCCAGAGACTTATTT
TCAGTATGCTGAACAACACTCAGCGCAAAAATCTGGAACAAAACTGGGAACTGGACTGCTCCTATGGTGTCAGAGGATTA
GCCCGGTTCCGCGTCAACGTTTATAAAGACCGGGGTACCTACGCCGCCTGTCTGCGAGCACTCAGTTCCAAAATTCCCAA
CTTTGACAAGCTGGGGCTTCCAGATGTTGTGCGGGAAATGTCCGAAAAGCCAAGAGGATTGATTCTGGTAACTGGACCGA
CCGGCTCAGGAAAAACCACCACGCTGGCGGCCATGATTGACTTGATCAATCGCACGCGAGCAGAGCACATCCTTACCATT
GAAGACCCGATTGAGTTTGTTTATGAGCCGATCAAGAGTCTGGTCCACCAGCGCCAACTGGGAGAAGATACCAAGAGCTT
TGCAAATGCGCTGAGAGCCGCGCTGCGGGAAGATCCAGACATTATTCTGGTGGGTGAGATGCGTGACCTGGAAACCATCT
CGCTGGCAATTTCTGCAGCGGAAACAGGACACCTCGTCTTTGCCACTCTGCACACCAGTTCAGCGGCTCAGACCGTTGAC
CGGATGATTGATGTGTTCCCGGCTGAGCGGCAAACCCAGGTGAGGGTTCAGCTTTCCAACTCGCTGGTAGCCGTCTTCAG
CCAGACACTGGTTCCCAAGAAAAATCCGAAACCAGGTGAGTACGGTCGGGTCATGGCTCAGGAAATCATGATTGTAACCC
CTGCTATTTCTAACTTAATTCGGGAAGGTAAAACAGCTCAAATTTACTCTGCCATTCAGACGGGGGGTAAGTTAGGGATG
CAGACGCTGGAAAAAGTTCTGTCCGATCAGTACAAAGCTGGATTGATTACCTTTGAATCAGCCATGTCCAAAACGTCCCG
TCCAGATGAACTCCAGCGCCTGATCGGGGGTTCTCCTGCAGGAGCCGCTCAGGCAGGCATGGCAGCTCGCCATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
55.043 |
93.531 |
0.515 |
| pilT | Pseudomonas stutzeri DSM 10701 |
54.755 |
93.531 |
0.512 |
| pilT | Acinetobacter baylyi ADP1 |
53.026 |
93.531 |
0.496 |
| pilT | Acinetobacter nosocomialis M2 |
52.45 |
93.531 |
0.491 |
| pilT | Acinetobacter baumannii D1279779 |
52.45 |
93.531 |
0.491 |
| pilT | Acinetobacter baumannii strain A118 |
52.45 |
93.531 |
0.491 |
| pilT | Legionella pneumophila strain Lp02 |
52.464 |
92.992 |
0.488 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.464 |
92.992 |
0.488 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.209 |
97.844 |
0.472 |
| pilT | Neisseria meningitidis 8013 |
51.032 |
91.375 |
0.466 |
| pilT | Neisseria gonorrhoeae MS11 |
50.737 |
91.375 |
0.464 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50 |
91.644 |
0.458 |
| pilT | Vibrio cholerae strain A1552 |
50 |
91.644 |
0.458 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.601 |
94.609 |
0.375 |