Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ANG_RS00265 Genome accession   NZ_AP013072
Coordinates   56113..57111 (-) Length   332 a.a.
NCBI ID   WP_003036959.1    Uniprot ID   I0SC30
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 51113..62111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS00245 (ANG_0048) - 52652..54469 (-) 1818 WP_003037015.1 acyltransferase family protein -
  ANG_RS00250 (ANG_0049) - 54459..54872 (-) 414 WP_003036952.1 MORN repeat-containing protein -
  ANG_RS00255 (ANG_0050) - 54881..55309 (-) 429 WP_003036965.1 low molecular weight protein-tyrosine-phosphatase -
  ANG_RS00260 (ANG_0051) - 55548..56111 (-) 564 WP_003036923.1 nucleotidyltransferase family protein -
  ANG_RS00265 (ANG_0052) ruvB 56113..57111 (-) 999 WP_003036959.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ANG_RS00280 (ANG_0055) - 58706..59743 (-) 1038 WP_003036954.1 aldose epimerase family protein -
  ANG_RS00285 (ANG_0056) lacD 59786..60787 (-) 1002 WP_003036980.1 tagatose-bisphosphate aldolase -
  ANG_RS00290 (ANG_0057) - 60798..61967 (-) 1170 WP_025271527.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37369.73 Da        Isoelectric Point: 4.3718

>NTDB_id=55053 ANG_RS00265 WP_003036959.1 56113..57111(-) (ruvB) [Streptococcus anginosus subsp. whileyi MAS624]
MSRILDNELMGDEELVERTLRPQYLREYIGQDKVKNQLKIFIEAAKMRDEALDHTLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGSGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAEADLTEIVERTAEIFEMDITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGDGLID
DQITDQALTMLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEEQETVEDMYEPYLIQKGFVMRTRTGRVATRK
AYEHLGYEYLEK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=55053 ANG_RS00265 WP_003036959.1 56113..57111(-) (ruvB) [Streptococcus anginosus subsp. whileyi MAS624]
ATGAGTAGAATTTTGGATAATGAATTGATGGGAGACGAGGAGCTCGTTGAGCGCACATTGCGTCCCCAGTATTTACGAGA
ATACATCGGGCAAGACAAGGTCAAAAATCAGCTGAAAATTTTCATTGAGGCAGCTAAAATGCGAGATGAAGCGCTAGATC
ACACGTTGCTTTTTGGACCTCCAGGGTTGGGAAAGACCACTATGGCTTTTGTCATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACTTCGGGTCCAGTTATTGAGAAAGCGGGCGATTTGGTGGCAATCTTGAACGATTTGGAGCCGGGAGATGTTCT
CTTTATTGATGAGATTCACCGCTTGCCTATGTCTGTTGAAGAGGTGCTCTATAGCGCTATGGAAGATTTTTACATTGATA
TTATGATTGGCTCTGGCGAGACCAGTCGTAGTGTTCACTTGGATTTGCCACCGTTTACCTTGATTGGCGCTACGACCAGA
GCTGGTATGTTGTCCAATCCTTTACGGGCTCGTTTTGGCATTACTGGTCACATGGAATATTATGCAGAAGCAGATTTGAC
CGAGATTGTGGAGCGAACGGCAGAAATCTTTGAAATGGACATTACTCATGAAGCAGCTGAAGAATTAGCACTGCGTAGCC
GGGGCACGCCTCGGATTGCCAATCGACTTCTCAAGCGTGTACGAGATTTTGCTCAGATTATGGGTGACGGACTAATTGAT
GACCAAATTACTGATCAAGCGCTGACGATGCTGGATGTGGATCAAGAAGGCTTAGATTATGTGGATCAGAAGATTCTCAA
GACCATGATTGAGGTTTATGGCGGCGGGCCAGTTGGTCTGGGGACTCTGTCTGTCAATATCGCAGAAGAGCAGGAAACGG
TAGAAGACATGTATGAGCCTTATTTAATCCAGAAAGGATTTGTTATGCGAACTCGAACAGGGCGCGTGGCAACTCGTAAA
GCTTACGAGCATTTGGGTTATGAATATTTGGAGAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SC30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

92.771

100

0.928
  ruvB Streptococcus pneumoniae R6

92.47

100

0.925
  ruvB Streptococcus pneumoniae D39

92.47

100

0.925
  ruvB Bacillus subtilis subsp. subtilis str. 168

59.816

98.193

0.587
  ruvB Helicobacter pylori 26695

51.703

97.289

0.503
  ruvB Synechocystis sp. PCC 6803

50.323

93.373

0.47

Multiple sequence alignment