Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   MMOS7_RS05150 Genome accession   NZ_AP011528
Coordinates   976803..977174 (-) Length   123 a.a.
NCBI ID   WP_119720958.1    Uniprot ID   -
Organism   Methanococcus maripaludis OS7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 971803..982174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMOS7_RS05125 (MMOS7_10040) - 972676..973140 (+) 465 WP_119720954.1 chemotaxis protein CheD -
  MMOS7_RS05130 (MMOS7_10050) - 973157..974560 (+) 1404 WP_119720955.1 methyl-accepting chemotaxis protein -
  MMOS7_RS05135 (MMOS7_10060) - 974587..975399 (-) 813 WP_119720956.1 protein-glutamate O-methyltransferase CheR -
  MMOS7_RS05140 (MMOS7_10070) - 975470..976078 (-) 609 WP_013999373.1 chemotaxis protein CheC -
  MMOS7_RS05145 (MMOS7_10080) - 976098..976787 (-) 690 WP_119720957.1 chemotaxis protein CheC -
  MMOS7_RS05150 (MMOS7_10090) vraR 976803..977174 (-) 372 WP_119720958.1 response regulator Regulator
  MMOS7_RS05155 (MMOS7_10100) - 977259..978305 (-) 1047 WP_119720959.1 CheF family chemotaxis protein -
  MMOS7_RS05160 (MMOS7_10110) - 978581..979081 (+) 501 WP_119720960.1 UPF0254 family protein -
  MMOS7_RS05165 (MMOS7_10120) aroE 979084..979920 (+) 837 WP_119720961.1 shikimate dehydrogenase -
  MMOS7_RS05170 (MMOS7_10130) - 979937..980683 (+) 747 WP_119720962.1 coenzyme F420-0:L-glutamate ligase -
  MMOS7_RS05175 (MMOS7_10140) cobS 980736..981509 (-) 774 WP_119720963.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13548.88 Da        Isoelectric Point: 4.6838

>NTDB_id=54794 MMOS7_RS05150 WP_119720958.1 976803..977174(-) (vraR) [Methanococcus maripaludis OS7]
MASIVKTMIVDDSAFMRNILKRILSTTNKYVVIGEAANGADAIKMAEELQPDLISMDIVMPETDGITATKAIKEKTPEIR
IVMCTSVDQEQKMIDAVNAGADGYIVKPFQAPKILEQFNKLFP

Nucleotide


Download         Length: 372 bp        

>NTDB_id=54794 MMOS7_RS05150 WP_119720958.1 976803..977174(-) (vraR) [Methanococcus maripaludis OS7]
ATGGCAAGTATTGTAAAAACAATGATTGTAGATGATTCTGCATTTATGAGGAACATTTTAAAGCGAATTTTATCAACAAC
AAATAAATACGTTGTAATTGGTGAAGCTGCAAACGGAGCAGATGCAATTAAAATGGCTGAAGAGTTACAACCTGATTTAA
TCAGTATGGATATTGTAATGCCTGAAACTGATGGAATAACTGCTACAAAAGCAATAAAAGAAAAAACCCCTGAAATCAGG
ATAGTAATGTGTACCTCAGTAGATCAAGAGCAAAAAATGATTGATGCTGTAAATGCGGGTGCAGATGGATATATTGTAAA
ACCATTTCAAGCACCAAAAATTTTAGAACAGTTTAACAAATTGTTTCCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.655

94.309

0.374

Multiple sequence alignment