Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   CHRO_RS08475 Genome accession   NC_019695
Coordinates   1912839..1914848 (-) Length   669 a.a.
NCBI ID   WP_015153787.1    Uniprot ID   K9TZ08
Organism   Chroococcidiopsis thermalis PCC 7203     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1907839..1919848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHRO_RS29505 (Chro_1718) - 1908932..1909540 (+) 609 WP_015153783.1 GNAT family N-acetyltransferase -
  CHRO_RS08460 (Chro_1719) - 1909628..1910203 (-) 576 WP_015153784.1 hypothetical protein -
  CHRO_RS08465 (Chro_1720) - 1910268..1911497 (-) 1230 WP_015153785.1 type II secretion system F family protein -
  CHRO_RS08470 (Chro_1721) pilT 1911583..1912707 (-) 1125 WP_015153786.1 type IV pilus twitching motility protein PilT Machinery gene
  CHRO_RS08475 (Chro_1722) pilB/pilB1 1912839..1914848 (-) 2010 WP_015153787.1 GspE/PulE family protein Machinery gene
  CHRO_RS08480 (Chro_1723) grpE 1915143..1915907 (+) 765 WP_015153788.1 nucleotide exchange factor GrpE -
  CHRO_RS31865 - 1915908..1916057 (+) 150 WP_158631818.1 hypothetical protein -
  CHRO_RS08485 (Chro_1724) dnaK 1916035..1917948 (+) 1914 WP_015153789.1 molecular chaperone DnaK -
  CHRO_RS08490 (Chro_1725) dnaJ 1918179..1919312 (+) 1134 WP_015153790.1 molecular chaperone DnaJ -
  CHRO_RS08495 (Chro_1726) - 1919309..1919560 (+) 252 WP_015153791.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 74598.36 Da        Isoelectric Point: 4.8932

>NTDB_id=54795 CHRO_RS08475 WP_015153787.1 1912839..1914848(-) (pilB/pilB1) [Chroococcidiopsis thermalis PCC 7203]
MSYSSSMQRRALIVKNDLSPFGNKVVETGYVSKEQMKQALSESRSTGRSLPEILEAITGRQLPPDLIRQYKKQQLFELKI
LYGVEFLDPEINQIGTSQVGELIDSLIPIDICRRYRLLPISKSDEPPSILIAMVDPDNLDAQDNLNRILRPRDIGLQRTV
ITLEDFQELLSKYLDENVEKQKQQADNQRNNANAVDFTVELDGLDLQDAPEEGDADLGASLKDADAAPVIALVNKILIKA
LQEKVSDIHIEPQEEYLRVRFRRDGVLRQAFDPLPKQIVPAVTARFKIIAELDIAERRAPQDGRIRRVFEGRKVDFRVNT
LPSRYGEKVVLRILDNSSTQLGLDKLISDVESLQIVRDLASRPFGLLLVTGPTGSGKSTTLYSILAERNDPGVNISTAED
PIEYSLPGITQVQVIREKGMDFASILRAFLRQDPDVILVGETRDKETAKTAIEAALTGHLVLTTLHTNDAAGAISRLDEM
GVEPFMVSGALLGVVAQRLMRRVCSDCRIPYTPSADELARFGLASSKDVELTLYKAKSLELEEIQAAKAKNQLCSKCAGV
GYKGRCGVYEVMRVTERLQNLITEGAPSERIKEAAVEEGMKTLLAYSLELVMQGNTTLEEVERVTFTDSGLEAELKAKRK
SSLECKTCHAELQPEWFECPYCMTPRFSD

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=54795 CHRO_RS08475 WP_015153787.1 1912839..1914848(-) (pilB/pilB1) [Chroococcidiopsis thermalis PCC 7203]
ATGTCTTACTCCTCTTCAATGCAGCGGCGTGCCTTAATTGTCAAAAATGACTTGTCTCCTTTTGGCAACAAAGTAGTTGA
GACTGGGTATGTCAGTAAAGAGCAGATGAAGCAGGCTTTAAGCGAAAGTCGCTCGACTGGGCGATCGCTACCGGAGATTT
TAGAAGCTATAACTGGACGACAACTGCCACCAGACTTAATTAGACAATATAAAAAACAACAGCTATTCGAGCTAAAAATT
CTCTACGGTGTAGAGTTTCTCGATCCAGAAATCAATCAGATTGGCACAAGTCAAGTCGGCGAGTTGATCGATTCTTTGAT
CCCGATTGATATTTGTCGTCGCTATCGGCTGCTACCTATATCAAAAAGTGATGAGCCTCCGTCCATTTTGATCGCGATGG
TCGATCCAGATAATTTGGATGCCCAAGATAATTTAAACCGTATTCTTCGCCCCCGCGATATTGGATTGCAAAGGACGGTC
ATTACACTAGAAGACTTCCAAGAACTTCTTTCTAAATATTTAGATGAAAATGTAGAAAAACAAAAACAACAGGCAGACAA
TCAAAGAAATAACGCTAATGCCGTCGATTTCACTGTAGAGTTAGATGGACTTGATTTACAAGATGCACCAGAGGAGGGTG
ACGCAGATTTAGGTGCATCTCTCAAAGATGCGGATGCTGCTCCTGTAATTGCCCTAGTGAATAAAATTCTGATCAAAGCG
TTACAAGAAAAAGTTTCAGATATTCACATTGAACCCCAAGAAGAGTACTTGCGCGTCCGATTTCGTAGAGATGGAGTATT
GCGGCAGGCTTTTGACCCCCTACCCAAACAAATTGTTCCTGCTGTGACAGCTCGATTTAAAATTATTGCTGAATTAGATA
TTGCCGAACGACGCGCACCCCAAGATGGTCGTATTCGCCGCGTATTTGAAGGACGAAAAGTTGATTTTCGCGTCAACACC
TTACCCAGTCGTTACGGGGAAAAAGTTGTTTTGCGGATTTTGGATAACTCATCTACCCAACTTGGGTTAGACAAATTAAT
TAGCGATGTAGAGAGCCTGCAAATTGTGAGGGACTTGGCAAGTCGTCCGTTCGGACTGCTGTTGGTTACGGGTCCGACGG
GAAGCGGTAAATCAACCACTTTATACTCAATTTTGGCAGAACGCAACGATCCAGGGGTAAATATCAGCACCGCTGAAGAC
CCCATTGAGTATTCTCTACCAGGAATTACGCAAGTCCAGGTGATTCGAGAAAAAGGAATGGATTTTGCGTCAATTTTGCG
GGCTTTTCTACGACAAGACCCAGACGTAATTCTAGTTGGTGAGACACGGGATAAGGAAACGGCAAAAACTGCTATTGAGG
CAGCACTGACGGGACACTTAGTATTGACAACTCTGCACACTAATGATGCTGCTGGGGCAATTTCTCGTTTAGACGAAATG
GGTGTAGAACCATTCATGGTGTCCGGTGCGCTGCTAGGGGTTGTGGCTCAACGTTTGATGCGGCGCGTCTGTTCTGATTG
TCGCATTCCTTATACTCCCAGTGCCGATGAGTTAGCTCGGTTTGGACTGGCGAGTTCTAAAGATGTCGAACTCACGCTTT
ACAAAGCTAAATCTTTGGAGTTAGAAGAAATTCAAGCCGCTAAGGCTAAAAATCAACTTTGCTCTAAATGCGCTGGCGTT
GGATATAAAGGGCGTTGTGGCGTATATGAAGTTATGCGCGTTACAGAACGACTACAAAATTTAATTACTGAAGGAGCGCC
GAGCGAACGGATTAAAGAAGCAGCCGTAGAAGAGGGCATGAAAACGTTGTTAGCTTATAGTCTGGAGCTAGTGATGCAAG
GTAACACGACTTTGGAAGAAGTAGAGCGCGTCACTTTCACTGATTCTGGTTTGGAAGCGGAACTGAAAGCAAAACGTAAA
AGTTCATTAGAGTGTAAAACTTGTCATGCAGAGCTACAACCAGAGTGGTTTGAGTGTCCTTATTGTATGACTCCACGATT
TAGTGACTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(235-502)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(27-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9TZ08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

67.069

98.954

0.664

Multiple sequence alignment