Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | RIV7116_RS00625 | Genome accession | NC_019678 |
| Coordinates | 153369..154490 (-) | Length | 373 a.a. |
| NCBI ID | WP_015116314.1 | Uniprot ID | - |
| Organism | Rivularia sp. PCC 7116 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 148369..159490
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RIV7116_RS00600 (Riv7116_0122) | - | 148620..149006 (-) | 387 | WP_015116310.1 | DUF1257 domain-containing protein | - |
| RIV7116_RS00605 (Riv7116_0123) | - | 149057..149275 (-) | 219 | WP_015116311.1 | DUF2997 domain-containing protein | - |
| RIV7116_RS34615 (Riv7116_0124) | - | 149881..150941 (+) | 1061 | Protein_121 | IS630 family transposase | - |
| RIV7116_RS00615 (Riv7116_0125) | - | 151344..151898 (-) | 555 | WP_015116312.1 | hypothetical protein | - |
| RIV7116_RS00620 (Riv7116_0126) | - | 152033..153262 (-) | 1230 | WP_015116313.1 | type II secretion system F family protein | - |
| RIV7116_RS00625 (Riv7116_0127) | pilT | 153369..154490 (-) | 1122 | WP_015116314.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| RIV7116_RS00630 (Riv7116_0128) | pilB/pilB1 | 154555..156567 (-) | 2013 | WP_015116315.1 | GspE/PulE family protein | Machinery gene |
| RIV7116_RS00635 (Riv7116_0129) | grpE | 157101..157760 (+) | 660 | WP_015116316.1 | nucleotide exchange factor GrpE | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 41028.41 Da Isoelectric Point: 7.7408
>NTDB_id=54668 RIV7116_RS00625 WP_015116314.1 153369..154490(-) (pilT) [Rivularia sp. PCC 7116]
MEMMIEDLMEQMIEMGGSDMHLSAGLPPYFRISGKLTPIGEEALSSDQCQRLIFSMLNNSQRKILEQNWELDCSYGVKGL
ARFRVNVYKERGTYAACLRALSSKIPNFDKLGLPDVVREMCDKPKGMILVTGPTGSGKTTTLAAMIDLINRTKSEHILTI
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKGSLREDPDIILIGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPADRQTQVRVQLSNSLVAVFSQTLVPKKNPKPDEFGRVMAQEIMVITPAISNMIREGKTSQIYSSIQTGAKLGM
QTLEKVLADYVKAGTISFEAAMSKTSKPDEIQRLIGSAPTRAANGKAKAGARR
MEMMIEDLMEQMIEMGGSDMHLSAGLPPYFRISGKLTPIGEEALSSDQCQRLIFSMLNNSQRKILEQNWELDCSYGVKGL
ARFRVNVYKERGTYAACLRALSSKIPNFDKLGLPDVVREMCDKPKGMILVTGPTGSGKTTTLAAMIDLINRTKSEHILTI
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKGSLREDPDIILIGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPADRQTQVRVQLSNSLVAVFSQTLVPKKNPKPDEFGRVMAQEIMVITPAISNMIREGKTSQIYSSIQTGAKLGM
QTLEKVLADYVKAGTISFEAAMSKTSKPDEIQRLIGSAPTRAANGKAKAGARR
Nucleotide
Download Length: 1122 bp
>NTDB_id=54668 RIV7116_RS00625 WP_015116314.1 153369..154490(-) (pilT) [Rivularia sp. PCC 7116]
ATGGAAATGATGATTGAAGATTTAATGGAACAAATGATTGAAATGGGAGGTTCGGATATGCATTTGTCCGCTGGTTTGCC
TCCTTATTTTCGCATCAGCGGTAAATTAACACCGATCGGAGAAGAAGCCTTAAGTTCCGATCAATGTCAGAGACTAATTT
TTAGTATGTTAAATAATTCTCAACGTAAAATCCTCGAACAAAATTGGGAATTAGATTGTTCTTACGGTGTAAAAGGATTA
GCGCGTTTTCGGGTAAACGTTTACAAGGAACGCGGTACTTATGCTGCTTGTTTAAGAGCATTAAGTTCTAAAATTCCCAA
TTTTGATAAATTGGGTTTACCAGATGTGGTTCGAGAAATGTGCGACAAACCCAAAGGAATGATATTGGTAACTGGCCCCA
CCGGTTCCGGTAAGACAACAACTTTGGCGGCAATGATTGATTTAATCAACCGGACAAAATCTGAACATATCCTAACAATT
GAAGACCCGATTGAATTTGTTTACGAACCAATTAAAAGTCTGGTTCACCAACGTCAATTAGGTGAAGATACTAAAAGTTT
TGCTAATGCTTTAAAAGGTTCTTTGCGTGAAGATCCAGATATTATTTTGATTGGAGAGATGCGGGATTTGGAAACAATTT
CCCTGGCTATTTCCGCAGCAGAAACTGGTCACTTAGTATTCGGAACATTACACACATCTTCAGCAGCACAAACCGTTGAT
AGAATCATCGACGTTTTCCCTGCTGATAGACAAACTCAAGTTCGCGTACAGTTGTCTAACTCTTTAGTTGCGGTATTTAG
CCAAACTTTAGTACCAAAGAAAAATCCTAAACCTGACGAATTTGGTCGAGTTATGGCTCAGGAAATTATGGTTATTACTC
CTGCTATTTCCAACATGATTCGTGAAGGAAAAACATCTCAAATTTATTCATCGATTCAAACTGGTGCCAAGTTAGGAATG
CAAACCTTAGAGAAAGTTCTTGCTGATTACGTTAAAGCAGGAACTATTTCTTTTGAAGCCGCCATGTCCAAAACTTCCAA
GCCAGATGAAATCCAACGTCTAATTGGTTCCGCACCAACTCGAGCAGCTAATGGTAAAGCAAAAGCTGGTGCAAGACGTT
AG
ATGGAAATGATGATTGAAGATTTAATGGAACAAATGATTGAAATGGGAGGTTCGGATATGCATTTGTCCGCTGGTTTGCC
TCCTTATTTTCGCATCAGCGGTAAATTAACACCGATCGGAGAAGAAGCCTTAAGTTCCGATCAATGTCAGAGACTAATTT
TTAGTATGTTAAATAATTCTCAACGTAAAATCCTCGAACAAAATTGGGAATTAGATTGTTCTTACGGTGTAAAAGGATTA
GCGCGTTTTCGGGTAAACGTTTACAAGGAACGCGGTACTTATGCTGCTTGTTTAAGAGCATTAAGTTCTAAAATTCCCAA
TTTTGATAAATTGGGTTTACCAGATGTGGTTCGAGAAATGTGCGACAAACCCAAAGGAATGATATTGGTAACTGGCCCCA
CCGGTTCCGGTAAGACAACAACTTTGGCGGCAATGATTGATTTAATCAACCGGACAAAATCTGAACATATCCTAACAATT
GAAGACCCGATTGAATTTGTTTACGAACCAATTAAAAGTCTGGTTCACCAACGTCAATTAGGTGAAGATACTAAAAGTTT
TGCTAATGCTTTAAAAGGTTCTTTGCGTGAAGATCCAGATATTATTTTGATTGGAGAGATGCGGGATTTGGAAACAATTT
CCCTGGCTATTTCCGCAGCAGAAACTGGTCACTTAGTATTCGGAACATTACACACATCTTCAGCAGCACAAACCGTTGAT
AGAATCATCGACGTTTTCCCTGCTGATAGACAAACTCAAGTTCGCGTACAGTTGTCTAACTCTTTAGTTGCGGTATTTAG
CCAAACTTTAGTACCAAAGAAAAATCCTAAACCTGACGAATTTGGTCGAGTTATGGCTCAGGAAATTATGGTTATTACTC
CTGCTATTTCCAACATGATTCGTGAAGGAAAAACATCTCAAATTTATTCATCGATTCAAACTGGTGCCAAGTTAGGAATG
CAAACCTTAGAGAAAGTTCTTGCTGATTACGTTAAAGCAGGAACTATTTCTTTTGAAGCCGCCATGTCCAAAACTTCCAA
GCCAGATGAAATCCAACGTCTAATTGGTTCCGCACCAACTCGAGCAGCTAATGGTAAAGCAAAAGCTGGTGCAAGACGTT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
53.009 |
93.566 |
0.496 |
| pilT | Pseudomonas aeruginosa PAK |
53.314 |
93.029 |
0.496 |
| pilT | Acinetobacter baylyi ADP1 |
51.873 |
93.029 |
0.483 |
| pilT | Acinetobacter nosocomialis M2 |
51.585 |
93.029 |
0.48 |
| pilT | Acinetobacter baumannii D1279779 |
51.585 |
93.029 |
0.48 |
| pilT | Acinetobacter baumannii strain A118 |
51.585 |
93.029 |
0.48 |
| pilT | Legionella pneumophila strain Lp02 |
51.009 |
93.029 |
0.475 |
| pilT | Legionella pneumophila strain ERS1305867 |
51.009 |
93.029 |
0.475 |
| pilT | Neisseria gonorrhoeae MS11 |
50.442 |
90.885 |
0.458 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.023 |
94.906 |
0.456 |
| pilT | Neisseria meningitidis 8013 |
50.147 |
90.885 |
0.456 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.123 |
91.689 |
0.45 |
| pilT | Vibrio cholerae strain A1552 |
49.123 |
91.689 |
0.45 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.81 |
94.638 |
0.367 |