Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   K5O18_RS10390 Genome accession   NZ_CP081939
Coordinates   2081817..2082122 (+) Length   101 a.a.
NCBI ID   WP_017806953.1    Uniprot ID   A0A0F5EWR5
Organism   Avibacterium paragallinarum strain p4chr1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2076817..2087122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS10355 (K5O18_10355) tolB 2077638..2078927 (+) 1290 WP_226537711.1 Tol-Pal system beta propeller repeat protein TolB -
  K5O18_RS10360 (K5O18_10360) pal 2078938..2079390 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  K5O18_RS10375 (K5O18_10375) comN 2079928..2080449 (+) 522 WP_110480071.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K5O18_RS10380 (K5O18_10380) comO 2080450..2081169 (+) 720 WP_110480073.1 type II secretion system protein J Machinery gene
  K5O18_RS10385 (K5O18_10385) - 2081171..2081836 (+) 666 WP_110480075.1 DUF2572 family protein -
  K5O18_RS10390 (K5O18_10390) comQ 2081817..2082122 (+) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  K5O18_RS10395 (K5O18_10395) recC 2082134..2085538 (+) 3405 WP_110480077.1 exodeoxyribonuclease V subunit gamma -
  K5O18_RS10400 (K5O18_10400) - 2085576..2086394 (-) 819 WP_110480079.1 pyridoxal phosphatase -
  K5O18_RS10405 (K5O18_10405) araD 2086422..2087116 (-) 695 Protein_2043 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11774.67 Da        Isoelectric Point: 10.1103

>NTDB_id=524725 K5O18_RS10390 WP_017806953.1 2081817..2082122(+) (comQ) [Avibacterium paragallinarum strain p4chr1]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=524725 K5O18_RS10390 WP_017806953.1 2081817..2082122(+) (comQ) [Avibacterium paragallinarum strain p4chr1]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396