NTDB

Overview

Name	comYC	Type	Machinery gene
Locus tag	I6I02_RS00130	Genome accession	NZ_CP066093
Coordinates	34880..35206 (+)	Length	108 a.a.
NCBI ID	WP_002885815.1	Uniprot ID	-
Organism	Streptococcus salivarius strain FDAARGOS_1045
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29880..40206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I02_RS00115 (I6I02_00115)	-	32517..32879 (+)	363	WP_002887019.1	DUF1033 family protein	-
I6I02_RS00120 (I6I02_00120)	comGA/cglA/cilD	32960..33901 (+)	942	WP_060971595.1	competence type IV pilus ATPase ComGA	Machinery gene
I6I02_RS00125 (I6I02_00125)	comYB	33783..34883 (+)	1101	WP_198463594.1	competence type IV pilus assembly protein ComGB	Machinery gene
I6I02_RS00130 (I6I02_00130)	comYC	34880..35206 (+)	327	WP_002885815.1	competence type IV pilus major pilin ComGC	Machinery gene
I6I02_RS00135 (I6I02_00135)	comYD	35166..35594 (+)	429	WP_269780043.1	competence type IV pilus minor pilin ComGD	Machinery gene
I6I02_RS00140 (I6I02_00140)	comGE	35626..35856 (+)	231	WP_051412000.1	competence type IV pilus minor pilin ComGE	-
I6I02_RS00145 (I6I02_00145)	comYF	35843..36280 (+)	438	WP_037601472.1	competence type IV pilus minor pilin ComGF	Machinery gene
I6I02_RS00150 (I6I02_00150)	comGG	36258..36575 (+)	318	WP_041817287.1	competence type IV pilus minor pilin ComGG	-
I6I02_RS00155 (I6I02_00155)	comYH	36620..37576 (+)	957	WP_013991262.1	class I SAM-dependent methyltransferase	Machinery gene
I6I02_RS00160 (I6I02_00160)	-	37633..38826 (+)	1194	WP_003095894.1	acetate kinase	-
I6I02_RS00165 (I6I02_00165)	-	39077..39274 (+)	198	WP_013991261.1	helix-turn-helix transcriptional regulator	-
I6I02_RS00170 (I6I02_00170)	-	39286..39942 (+)	657	WP_013991260.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

Download Length: 108 a.a. Molecular weight: 11932.03 Da Isoelectric Point: 9.9219

                                >NTDB_id=517328 I6I02_RS00130 WP_002885815.1 34880..35206(+) (comYC) [Streptococcus salivarius strain FDAARGOS_1045]

MKMMLKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVS

EGQITQKQADSYNDYYAKHGGESRSVAN

Nucleotide

Download Length: 327 bp

                                >NTDB_id=517328 I6I02_RS00130 WP_002885815.1 34880..35206(+) (comYC) [Streptococcus salivarius strain FDAARGOS_1045]

ATGAAAATGATGTTAAAAAAATTGAATGCCGTAAAACTACGAGCTTTTACGCTAATTGAAATGCTAGTCGTGCTTCTCAT

TATCAGTATTCTCCTCTTGCTTTTTGTTCCTAACTTGAGTAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTG

TGGTCAAGGTCGTGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTAGCAGCTCTTGTTTCA

GAAGGTCAAATCACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGC

CAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-34)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYC	Streptococcus mutans UA140	69.231	96.296	0.667
comYC	Streptococcus mutans UA159	69.231	96.296	0.667
comYC	Streptococcus gordonii str. Challis substr. CH1	63.81	97.222	0.62
comGC/cglC	Streptococcus mitis SK321	62.264	98.148	0.611
comGC/cglC	Streptococcus mitis NCTC 12261	58.333	100	0.583
comGC/cglC	Streptococcus pneumoniae D39	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae R6	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae Rx1	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae TIGR4	58.491	98.148	0.574
comGC	Lactococcus lactis subsp. cremoris KW2	56.604	98.148	0.556
comYC	Streptococcus suis isolate S10	60.227	81.481	0.491
comGC	Staphylococcus aureus MW2	50	72.222	0.361
comGC	Staphylococcus aureus N315	50	72.222	0.361

Detailed information NTG0517328