Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KZX72_RS00495 Genome accession   NZ_CP080120
Coordinates   93988..94464 (-) Length   158 a.a.
NCBI ID   WP_001186709.1    Uniprot ID   -
Organism   Escherichia coli strain M24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 88988..99464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZX72_RS00455 (KZX72_00455) - 89560..89752 (-) 193 Protein_91 hypothetical protein -
  KZX72_RS00460 (KZX72_00460) - 89830..91443 (-) 1614 WP_000080195.1 IS66-like element ISEc23 family transposase -
  KZX72_RS00465 (KZX72_00465) tnpB 91474..91824 (-) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -
  KZX72_RS00470 (KZX72_00470) - 91821..92246 (-) 426 WP_000422741.1 transposase -
  KZX72_RS00475 (KZX72_00475) - 92328..92792 (-) 465 WP_061091426.1 DUF5983 family protein -
  KZX72_RS00480 (KZX72_00480) - 92789..93166 (-) 378 WP_001094448.1 TA system toxin CbtA family protein -
  KZX72_RS00485 (KZX72_00485) - 93256..93624 (-) 369 WP_024175935.1 type IV toxin-antitoxin system YeeU family antitoxin -
  KZX72_RS00490 (KZX72_00490) - 93698..93919 (-) 222 WP_000692346.1 DUF987 domain-containing protein -
  KZX72_RS00495 (KZX72_00495) radC 93988..94464 (-) 477 WP_001186709.1 DNA repair protein RadC Machinery gene
  KZX72_RS00500 (KZX72_00500) - 94476..94961 (-) 486 WP_000214415.1 antirestriction protein -
  KZX72_RS00505 (KZX72_00505) - 95053..95871 (-) 819 WP_001234753.1 DUF932 domain-containing protein -
  KZX72_RS00510 (KZX72_00510) - 95962..96195 (-) 234 WP_001117568.1 DUF905 family protein -
  KZX72_RS00515 (KZX72_00515) - 96266..99112 (-) 2847 WP_023281714.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17617.26 Da        Isoelectric Point: 7.6151

>NTDB_id=517330 KZX72_RS00495 WP_001186709.1 93988..94464(-) (radC) [Escherichia coli strain M24]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=517330 KZX72_RS00495 WP_001186709.1 93988..94464(-) (radC) [Escherichia coli strain M24]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399