Detailed information NTG0517329

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: I6I02_RS00135
• Genome accession: NZ_CP066093
• Coordinates: 35166..35594 (+)
• Length: 142 a.a.
• NCBI ID: WP_269780043.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain FDAARGOS_1045
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 30166..40594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I02_RS00115 (I6I02_00115)	-	32517..32879 (+)	363	WP_002887019.1	DUF1033 family protein	-
I6I02_RS00120 (I6I02_00120)	comGA/cglA/cilD	32960..33901 (+)	942	WP_060971595.1	competence type IV pilus ATPase ComGA	Machinery gene
I6I02_RS00125 (I6I02_00125)	comYB	33783..34883 (+)	1101	WP_198463594.1	competence type IV pilus assembly protein ComGB	Machinery gene
I6I02_RS00130 (I6I02_00130)	comYC	34880..35206 (+)	327	WP_002885815.1	competence type IV pilus major pilin ComGC	Machinery gene
I6I02_RS00135 (I6I02_00135)	comYD	35166..35594 (+)	429	WP_269780043.1	competence type IV pilus minor pilin ComGD	Machinery gene
I6I02_RS00140 (I6I02_00140)	comGE	35626..35856 (+)	231	WP_051412000.1	competence type IV pilus minor pilin ComGE	-
I6I02_RS00145 (I6I02_00145)	comYF	35843..36280 (+)	438	WP_037601472.1	competence type IV pilus minor pilin ComGF	Machinery gene
I6I02_RS00150 (I6I02_00150)	comGG	36258..36575 (+)	318	WP_041817287.1	competence type IV pilus minor pilin ComGG	-
I6I02_RS00155 (I6I02_00155)	comYH	36620..37576 (+)	957	WP_013991262.1	class I SAM-dependent methyltransferase	Machinery gene
I6I02_RS00160 (I6I02_00160)	-	37633..38826 (+)	1194	WP_003095894.1	acetate kinase	-
I6I02_RS00165 (I6I02_00165)	-	39077..39274 (+)	198	WP_013991261.1	helix-turn-helix transcriptional regulator	-
I6I02_RS00170 (I6I02_00170)	-	39286..39942 (+)	657	WP_013991260.1	CPBP family intramembrane glutamic endopeptidase	-
I6I02_RS00175 (I6I02_00175)	-	40016..40462 (+)	447	WP_013991259.1	hypothetical protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15702.19 Da
• Isoelectric Point: 10.3019

>NTDB_id=517329 I6I02_RS00135 WP_269780043.1 35166..35594(+) (comYD) [Streptococcus salivarius strain FDAARGOS_1045]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGANVELQLAKD
KISNGKSSLVIPKSIHLDKGQTLMFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=517329 I6I02_RS00135 WP_269780043.1 35166..35594(+) (comYD) [Streptococcus salivarius strain FDAARGOS_1045]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTCACCTTGTTGGAGAGTCTGGTGACACTAGCAGT
GGTAGCCTTTCTCACTCTGAGTTTGTCAGGCTCAGTGACAGGTATTTTTCAACAGGTTGAAACTAACCTTTTTTATCTGC
GCTTTGAGTACCTATACAGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGCGCCAATGTTGAATTGCAGTTGGCCAAGGAT
AAAATCAGTAACGGAAAATCCAGTCTGGTGATTCCTAAAAGTATTCATCTTGATAAGGGGCAGACGCTAATGTTTGATGC
CAAAGGAGGCAACTCGAGCCTCACCAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.143	98.592	0.415
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38