Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | IM698_RS06260 | Genome accession | NZ_CP063682 |
| Coordinates | 1390417..1391526 (+) | Length | 369 a.a. |
| NCBI ID | WP_260810966.1 | Uniprot ID | - |
| Organism | Vibrio splendidus strain ED144 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 1391600..1392922 | 1390417..1391526 | flank | 74 |
Gene organization within MGE regions
Location: 1390417..1392922
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IM698_RS06260 (IM698_06245) | pilU | 1390417..1391526 (+) | 1110 | WP_260810966.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| IM698_RS06265 (IM698_06250) | - | 1391600..1392922 (-) | 1323 | WP_260810967.1 | IS4 family transposase | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 41357.16 Da Isoelectric Point: 5.8689
>NTDB_id=496211 IM698_RS06260 WP_260810966.1 1390417..1391526(+) (pilU) [Vibrio splendidus strain ED144]
MELNQTLEGMLSQKASDLYITVDAPILFRVDGELRPQGDKLNSAQVAQLLDAMMDQDRRDEYQQTREANFAIVRDFGRFR
VSAFFQRELPGAVIRRIETNIPTFEQLKLPDVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTVEDPI
EFVHEHKKCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LVPKEQKEQFLFDLSMNLRGVVAQQLIRDKNGSGRHGVFEILLNSPRVSDLIRRGELHELKTTMAKSKEIGMQTFDQALY
DLVVAGKISEEDAFHSADSANDLRLMLKTRRGDDDYGTGALAGVKIDMG
MELNQTLEGMLSQKASDLYITVDAPILFRVDGELRPQGDKLNSAQVAQLLDAMMDQDRRDEYQQTREANFAIVRDFGRFR
VSAFFQRELPGAVIRRIETNIPTFEQLKLPDVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTVEDPI
EFVHEHKKCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LVPKEQKEQFLFDLSMNLRGVVAQQLIRDKNGSGRHGVFEILLNSPRVSDLIRRGELHELKTTMAKSKEIGMQTFDQALY
DLVVAGKISEEDAFHSADSANDLRLMLKTRRGDDDYGTGALAGVKIDMG
Nucleotide
Download Length: 1110 bp
>NTDB_id=496211 IM698_RS06260 WP_260810966.1 1390417..1391526(+) (pilU) [Vibrio splendidus strain ED144]
ATGGAATTGAATCAAACCCTTGAGGGGATGCTTTCTCAAAAGGCTTCGGATCTTTATATCACTGTCGATGCTCCAATCCT
GTTTCGTGTGGATGGTGAACTTCGCCCTCAAGGAGATAAGCTGAATTCGGCTCAGGTCGCACAGTTGCTTGATGCGATGA
TGGATCAAGACCGACGTGATGAATATCAGCAAACGCGTGAGGCTAATTTTGCCATCGTGCGTGATTTTGGTCGCTTTCGT
GTCAGTGCATTTTTCCAACGAGAGCTACCTGGAGCGGTAATTCGACGCATCGAGACTAACATCCCAACCTTTGAGCAATT
AAAGCTTCCTGATGTTCTACAAGATCTGTCTATCGCTAAGCGGGGGCTTGTGCTGGTGGTTGGGGCAACTGGCTCGGGTA
AATCGACCTCGATGGCTGCGATGACAGGCTATCGCAATACCAATCGTTCAGGTCATATCCTAACGGTTGAAGACCCGATT
GAATTTGTCCATGAACATAAAAAATGTATCGTGACTCAGCGTGAGGTAGGGCTCGACACCGAGAGCTACGAAGTCGCACT
TAAGAACTCGTTACGCCAAGCACCAGATATGATCTTGATTGGCGAAATCCGTAGCCGTGAAACCATGGAATACGCGATGA
CCTTTGCTGAAACTGGTCACTTGTGTATGGCTACACTGCACGCCAATAATGCTAACCAAGCACTAGAGCGTATTCTTCAC
TTGGTGCCAAAAGAACAGAAAGAACAATTTCTATTTGATCTGTCGATGAATTTGCGTGGTGTGGTTGCTCAGCAGTTAAT
CCGAGATAAAAATGGCAGCGGTCGTCATGGTGTGTTTGAGATTTTACTCAACAGTCCACGAGTGTCTGACTTAATTCGTC
GCGGTGAGCTGCATGAGCTAAAAACAACAATGGCGAAATCGAAAGAGATTGGGATGCAGACCTTTGACCAAGCTTTGTAT
GATTTAGTTGTAGCAGGCAAGATCAGCGAAGAGGATGCGTTCCACAGTGCTGACTCCGCTAACGACTTACGCTTGATGCT
AAAAACCAGACGTGGCGATGATGACTATGGGACTGGTGCTTTAGCTGGTGTGAAGATCGATATGGGGTAG
ATGGAATTGAATCAAACCCTTGAGGGGATGCTTTCTCAAAAGGCTTCGGATCTTTATATCACTGTCGATGCTCCAATCCT
GTTTCGTGTGGATGGTGAACTTCGCCCTCAAGGAGATAAGCTGAATTCGGCTCAGGTCGCACAGTTGCTTGATGCGATGA
TGGATCAAGACCGACGTGATGAATATCAGCAAACGCGTGAGGCTAATTTTGCCATCGTGCGTGATTTTGGTCGCTTTCGT
GTCAGTGCATTTTTCCAACGAGAGCTACCTGGAGCGGTAATTCGACGCATCGAGACTAACATCCCAACCTTTGAGCAATT
AAAGCTTCCTGATGTTCTACAAGATCTGTCTATCGCTAAGCGGGGGCTTGTGCTGGTGGTTGGGGCAACTGGCTCGGGTA
AATCGACCTCGATGGCTGCGATGACAGGCTATCGCAATACCAATCGTTCAGGTCATATCCTAACGGTTGAAGACCCGATT
GAATTTGTCCATGAACATAAAAAATGTATCGTGACTCAGCGTGAGGTAGGGCTCGACACCGAGAGCTACGAAGTCGCACT
TAAGAACTCGTTACGCCAAGCACCAGATATGATCTTGATTGGCGAAATCCGTAGCCGTGAAACCATGGAATACGCGATGA
CCTTTGCTGAAACTGGTCACTTGTGTATGGCTACACTGCACGCCAATAATGCTAACCAAGCACTAGAGCGTATTCTTCAC
TTGGTGCCAAAAGAACAGAAAGAACAATTTCTATTTGATCTGTCGATGAATTTGCGTGGTGTGGTTGCTCAGCAGTTAAT
CCGAGATAAAAATGGCAGCGGTCGTCATGGTGTGTTTGAGATTTTACTCAACAGTCCACGAGTGTCTGACTTAATTCGTC
GCGGTGAGCTGCATGAGCTAAAAACAACAATGGCGAAATCGAAAGAGATTGGGATGCAGACCTTTGACCAAGCTTTGTAT
GATTTAGTTGTAGCAGGCAAGATCAGCGAAGAGGATGCGTTCCACAGTGCTGACTCCGCTAACGACTTACGCTTGATGCT
AAAAACCAGACGTGGCGATGATGACTATGGGACTGGTGCTTTAGCTGGTGTGAAGATCGATATGGGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Vibrio cholerae strain A1552 |
84.239 |
99.729 |
0.84 |
| pilU | Pseudomonas stutzeri DSM 10701 |
56.604 |
100 |
0.569 |
| pilU | Acinetobacter baylyi ADP1 |
54.416 |
95.122 |
0.518 |
| pilT | Acinetobacter baumannii D1279779 |
42.353 |
92.141 |
0.39 |
| pilT | Acinetobacter baumannii strain A118 |
42.353 |
92.141 |
0.39 |
| pilT | Acinetobacter nosocomialis M2 |
42.353 |
92.141 |
0.39 |
| pilT | Acinetobacter baylyi ADP1 |
41.813 |
92.683 |
0.388 |
| pilT | Legionella pneumophila strain Lp02 |
42.183 |
91.87 |
0.388 |
| pilT | Legionella pneumophila strain ERS1305867 |
42.183 |
91.87 |
0.388 |
| pilT | Pseudomonas aeruginosa PAK |
41.593 |
91.87 |
0.382 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.59 |
84.553 |
0.369 |
| pilT | Pseudomonas stutzeri DSM 10701 |
40.118 |
91.87 |
0.369 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.419 |
90.515 |
0.366 |
| pilT | Vibrio cholerae strain A1552 |
40.419 |
90.515 |
0.366 |
| pilT | Neisseria meningitidis 8013 |
38.551 |
93.496 |
0.36 |