Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAII   Type   Regulator
Locus tag   IGX38_RS05020 Genome accession   NZ_CP062162
Coordinates   1052972..1053397 (-) Length   141 a.a.
NCBI ID   WP_061374061.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain 2020WEIHUA_G     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1047972..1058397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGX38_RS05005 (IGX38_04990) cysN 1048789..1050687 (+) 1899 WP_061374059.1 sulfate adenylyltransferase subunit CysN -
  IGX38_RS05010 (IGX38_04995) tfpZ 1050810..1051547 (-) 738 WP_236450819.1 TfpX/TfpZ family type IV pilin accessory protein -
  IGX38_RS05015 (IGX38_05000) - 1051556..1052947 (-) 1392 WP_242100619.1 O-antigen ligase family protein -
  IGX38_RS05020 (IGX38_05005) pilA/pilAII 1052972..1053397 (-) 426 WP_061374061.1 pilin Regulator
  IGX38_RS05025 (IGX38_05010) pilA/pilAI 1053456..1053863 (-) 408 WP_419586397.1 pilin Machinery gene
  IGX38_RS05030 (IGX38_05015) pilB 1054195..1055898 (+) 1704 WP_106442874.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IGX38_RS05035 (IGX38_05020) pilC 1055901..1057118 (+) 1218 WP_242100621.1 type II secretion system F family protein Machinery gene
  IGX38_RS05040 (IGX38_05025) pilD 1057123..1057989 (+) 867 WP_242100623.1 prepilin peptidase Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14803.23 Da        Isoelectric Point: 9.1838

>NTDB_id=486611 IGX38_RS05020 WP_061374061.1 1052972..1053397(-) (pilA/pilAII) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
MTPVKKSYLGFSLIELMIVLSIIGILAAIAFPAYQNYTVRSTAAAALAEITPGKAAFEHAINENRTPSLVPGLPGFIGIG
ASTNYCTVTLIATATGSITCTARNGMPGRFNGKTITLNRTAEGLWGCTSDLDSKYKPGKCL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=486611 IGX38_RS05020 WP_061374061.1 1052972..1053397(-) (pilA/pilAII) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
ATGACGCCTGTGAAAAAGTCGTACCTCGGCTTTTCTCTGATTGAGTTGATGATCGTGCTATCAATCATCGGCATTCTTGC
GGCCATTGCTTTTCCTGCCTATCAGAACTACACCGTGCGCTCGACAGCCGCTGCCGCCTTGGCCGAAATCACTCCGGGAA
AGGCCGCGTTCGAGCACGCCATCAACGAGAATCGCACCCCCTCACTGGTGCCCGGATTGCCGGGATTTATCGGTATCGGC
GCGAGCACAAACTATTGCACCGTGACGCTTATAGCAACGGCGACGGGCTCGATCACCTGTACCGCACGAAACGGAATGCC
GGGACGGTTTAACGGCAAAACCATTACCCTTAACCGCACGGCGGAGGGCTTGTGGGGCTGCACCAGTGATCTGGACAGCA
AGTACAAGCCCGGCAAATGCCTCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-31)

Pilin (bacterial filament) (Pilin)

(39-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAII Pseudomonas stutzeri DSM 10701

82.979

100

0.83
  pilA/pilAI Pseudomonas stutzeri DSM 10701

69.466

92.908

0.645
  pilA Pseudomonas aeruginosa PAK

45.395

100

0.489
  comP Acinetobacter baylyi ADP1

40.136

100

0.418
  pilA Ralstonia pseudosolanacearum GMI1000

33.333

100

0.397
  pilA2 Legionella pneumophila strain ERS1305867

40.146

97.163

0.39
  pilA Acinetobacter baumannii strain A118

40.441

96.454

0.39
  pilA2 Legionella pneumophila str. Paris

40.602

94.326

0.383
  pilA Vibrio cholerae C6706

37.143

99.291

0.369
  pilA Vibrio cholerae strain A1552

37.143

99.291

0.369
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

37.143

99.291

0.369