Detailed information NTG0486615

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IGX38_RS05040
• Genome accession: NZ_CP062162
• Coordinates: 1057123..1057989 (+)
• Length: 288 a.a.
• NCBI ID: WP_242100623.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain 2020WEIHUA_G
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1052123..1062989

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IGX38_RS05020 (IGX38_05005)	pilA/pilAII	1052972..1053397 (-)	426	WP_061374061.1	pilin	Regulator
IGX38_RS05025 (IGX38_05010)	pilA/pilAI	1053456..1053863 (-)	408	WP_419586397.1	pilin	Machinery gene
IGX38_RS05030 (IGX38_05015)	pilB	1054195..1055898 (+)	1704	WP_106442874.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IGX38_RS05035 (IGX38_05020)	pilC	1055901..1057118 (+)	1218	WP_242100621.1	type II secretion system F family protein	Machinery gene
IGX38_RS05040 (IGX38_05025)	pilD	1057123..1057989 (+)	867	WP_242100623.1	prepilin peptidase	Machinery gene
IGX38_RS05045 (IGX38_05030)	coaE	1058120..1058728 (+)	609	WP_111481658.1	dephospho-CoA kinase	-
IGX38_RS05050 (IGX38_05035)	yacG	1058725..1058922 (+)	198	WP_095460669.1	DNA gyrase inhibitor YacG	-
IGX38_RS05055 (IGX38_05040)	-	1058935..1059615 (-)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
IGX38_RS05060 (IGX38_05045)	-	1059673..1060713 (-)	1041	WP_014595961.1	NADP(H)-dependent aldo-keto reductase	-
IGX38_RS05065 (IGX38_05050)	rplM	1061128..1061556 (+)	429	WP_014595962.1	50S ribosomal protein L13	-
IGX38_RS05070 (IGX38_05055)	rpsI	1061572..1061964 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
IGX38_RS05075 (IGX38_05060)	petA	1062220..1062813 (+)	594	WP_242100625.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31936.83 Da
• Isoelectric Point: 6.7328

>NTDB_id=486615 IGX38_RS05040 WP_242100623.1 1057123..1057989(+) (pilD) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
MFIDLLASHVLAFVLSAAVLGLLVGSFLNVVIHRLPIMMQSEWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHPIRA
WENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANNFALFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=486615 IGX38_RS05040 WP_242100623.1 1057123..1057989(+) (pilD) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
ATGTTTATTGATCTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAGCTT
TCTCAATGTCGTAATTCACCGTTTGCCAATAATGATGCAGAGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGTATC
CGCCCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCCTATCCGTGCC
TGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCGATA
TCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGGCGA
TGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTGCTG
CCGCTCTTGTGGTTAGGGTTGATTGCCAACAACTTTGCTTTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGC
CGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGATCACAGGCAAAGAGGGTATGGGCTACGGCGATTTCA
AGCTGCTGGCGATGCTTGGTGCCTGGGGTGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCTTCGGTGGTCGGCGCC
GTGCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCAATAGC
GGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.818	95.486	0.552
pilD	Vibrio campbellii strain DS40M4	57.664	95.139	0.549
pilD	Acinetobacter baumannii D1279779	51.799	96.528	0.5
pilD	Acinetobacter nosocomialis M2	51.799	96.528	0.5
pilD	Neisseria gonorrhoeae MS11	52.852	91.319	0.483