Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IGX38_RS05035 Genome accession   NZ_CP062162
Coordinates   1055901..1057118 (+) Length   405 a.a.
NCBI ID   WP_242100621.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain 2020WEIHUA_G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1050901..1062118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGX38_RS05015 (IGX38_05000) - 1051556..1052947 (-) 1392 WP_242100619.1 O-antigen ligase family protein -
  IGX38_RS05020 (IGX38_05005) pilA/pilAII 1052972..1053397 (-) 426 WP_061374061.1 pilin Regulator
  IGX38_RS05025 (IGX38_05010) pilA/pilAI 1053456..1053863 (-) 408 WP_419586397.1 pilin Machinery gene
  IGX38_RS05030 (IGX38_05015) pilB 1054195..1055898 (+) 1704 WP_106442874.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IGX38_RS05035 (IGX38_05020) pilC 1055901..1057118 (+) 1218 WP_242100621.1 type II secretion system F family protein Machinery gene
  IGX38_RS05040 (IGX38_05025) pilD 1057123..1057989 (+) 867 WP_242100623.1 prepilin peptidase Machinery gene
  IGX38_RS05045 (IGX38_05030) coaE 1058120..1058728 (+) 609 WP_111481658.1 dephospho-CoA kinase -
  IGX38_RS05050 (IGX38_05035) yacG 1058725..1058922 (+) 198 WP_095460669.1 DNA gyrase inhibitor YacG -
  IGX38_RS05055 (IGX38_05040) - 1058935..1059615 (-) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  IGX38_RS05060 (IGX38_05045) - 1059673..1060713 (-) 1041 WP_014595961.1 NADP(H)-dependent aldo-keto reductase -
  IGX38_RS05065 (IGX38_05050) rplM 1061128..1061556 (+) 429 WP_014595962.1 50S ribosomal protein L13 -
  IGX38_RS05070 (IGX38_05055) rpsI 1061572..1061964 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44062.77 Da        Isoelectric Point: 9.8747

>NTDB_id=486614 IGX38_RS05035 WP_242100621.1 1055901..1057118(+) (pilC) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
MAQKAIKTSVFAWEGTDRKGGKVRGELSGASPALVKAQLRKQGINPQKVRKKSVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAVIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFIVLAGLIGGAFAFK
EAHKRSEKFRNWFDRLLLKVPIVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRSATMKVKNDVSTGM
QLNFSMRTTGAFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=486614 IGX38_RS05035 WP_242100621.1 1055901..1057118(+) (pilC) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
ATGGCGCAGAAAGCGATCAAGACCAGTGTGTTTGCCTGGGAGGGAACCGACCGCAAGGGGGGTAAGGTTAGAGGCGAGCT
AAGTGGTGCGAGCCCGGCGCTGGTTAAGGCGCAATTGCGCAAGCAAGGGATCAATCCACAGAAAGTGCGCAAGAAGTCCG
TGTCTCTATTTGGAGCGGGCAAGAAAATTAAACCCATGGATATCGCGCTGTTCACCCGACAGATGGCGACGATGATGAAA
GCCGGTGTGCCGCTGCTGCAATCCTTCGATATCATCGGTGAGGGTTTCGACAATCCGAACATGCGCAAGCTGGTGGATGA
CCTGAAGCAGGAAGTTGCGGCAGGTAACAGTTTCGCGACGGCTTTGCGCAAGAAGCCACAATACTTCGATGACCTGTATT
GCAACTTGGTCGATTCCGGTGAGCAATCCGGTGCCTTGGAAACCTTGCTCGATCGCGTGGCGACTTACAAGGAAAAGACT
GAGGCATTGAAGGCCAAGATCAAGAAGGCGATGAACTATCCCATTGCGGTAGTCTTGGTGGCGGTCATCGTGTCGGCTAT
TTTGTTGATCAAGGTGGTGCCACAGTTCCAAGAGGTGTTCGCCAACTTCGGGGCCGAGCTTCCGGCTTTTACCTTGATGG
TCATTGGGTTGTCGGAAGCGCTGCAGGAGTGGTGGTTCATTGTTCTGGCGGGGTTGATTGGGGGGGCGTTTGCTTTCAAG
GAGGCACACAAGCGCTCCGAAAAATTTCGCAACTGGTTCGATCGTTTGCTGCTGAAGGTCCCAATTGTCGGTGACATTCT
TTACAAGTCATCCGTCGCCCGCTTTGCCCGCACTCTTTCGACGACTTTTGCTGCGGGTGTGCCGCTGGTGGATGCGCTGG
ATTCGGTGGCTGGGGCTACAGGCAATGTGGTCTTTCGAAGTGCGACGATGAAAGTCAAGAATGATGTGTCCACCGGCATG
CAGCTTAATTTCTCCATGCGTACTACGGGTGCCTTCCCAACCATGGCGGTTCAAATGACGGCGATCGGCGAAGAGTCTGG
TTCGCTTGATGAGATGCTCGCCAAGGTTGCGACTTTCTACGAGGATGAAGTCGATAACATGGTAGATAGCCTGACTAGCC
TGATGGAGCCGATGATCATGGCTGTACTCGGGGTTCTGGTGGGCGGCTTGATCATCGCTATGTACCTTCCGATATTCCAG
CTCGGCTCTGTAGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

90.864

100

0.909
  pilC Acinetobacter baylyi ADP1

61.425

100

0.617
  pilC Acinetobacter baumannii D1279779

60.494

100

0.605
  pilC Legionella pneumophila strain ERS1305867

53.03

97.778

0.519
  pilG Neisseria gonorrhoeae MS11

45.025

99.259

0.447
  pilG Neisseria meningitidis 44/76-A

45.025

99.259

0.447
  pilC Vibrio cholerae strain A1552

43.939

97.778

0.43
  pilC Vibrio campbellii strain DS40M4

41.414

97.778

0.405