Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JHS88_RS02610 Genome accession   NZ_CP068647
Coordinates   562033..562761 (-) Length   242 a.a.
NCBI ID   WP_031417805.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJ-187     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557033..567761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS88_RS02585 (JHS88_02590) trpR 557420..557731 (+) 312 WP_020904197.1 trp operon repressor -
  JHS88_RS02590 (JHS88_02595) yjjX 557780..558313 (-) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  JHS88_RS02595 (JHS88_02600) pheA 558338..559516 (-) 1179 WP_005468591.1 prephenate dehydratase -
  JHS88_RS02600 (JHS88_02605) hpf 559760..560086 (-) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JHS88_RS02605 (JHS88_02610) - 560417..561898 (-) 1482 WP_025547674.1 lytic transglycosylase F -
  JHS88_RS02610 (JHS88_02615) comL 562033..562761 (-) 729 WP_031417805.1 outer membrane protein assembly factor BamD Machinery gene
  JHS88_RS02615 (JHS88_02620) rluD 562898..563875 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JHS88_RS02620 (JHS88_02625) pgeF 563877..564605 (+) 729 WP_053318583.1 peptidoglycan editing factor PgeF -
  JHS88_RS02625 (JHS88_02630) clpC 564753..567326 (+) 2574 WP_025502266.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27876.84 Da        Isoelectric Point: 5.8151

>NTDB_id=460407 JHS88_RS02610 WP_031417805.1 562033..562761(-) (comL) [Vibrio parahaemolyticus strain TJ-187]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVVRTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=460407 JHS88_RS02610 WP_031417805.1 562033..562761(-) (comL) [Vibrio parahaemolyticus strain TJ-187]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGCGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAACCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCAGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCTGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGTAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

40.833

99.174

0.405
  comL Neisseria gonorrhoeae MS11

40.417

99.174

0.401