Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JHS95_RS16365 Genome accession   NZ_CP068627
Coordinates   3389370..3390893 (-) Length   507 a.a.
NCBI ID   WP_237301885.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3384370..3395893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS16345 (JHS95_16245) - 3385651..3386637 (+) 987 WP_140249468.1 serine/threonine protein kinase -
  JHS95_RS16350 (JHS95_16250) - 3386672..3387274 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  JHS95_RS16355 (JHS95_16255) - 3387316..3388194 (-) 879 WP_020904428.1 acyltransferase -
  JHS95_RS16360 (JHS95_16260) - 3388357..3389313 (+) 957 WP_020904427.1 DUF2860 domain-containing protein -
  JHS95_RS16365 (JHS95_16265) comM 3389370..3390893 (-) 1524 WP_237301885.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JHS95_RS16370 (JHS95_16270) ilvG 3391358..3393004 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  JHS95_RS16375 (JHS95_16275) ilvM 3393015..3393299 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  JHS95_RS16380 (JHS95_16280) ilvE 3393312..3394250 (+) 939 WP_020904425.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54954.97 Da        Isoelectric Point: 8.4831

>NTDB_id=460197 JHS95_RS16365 WP_237301885.1 3389370..3390893(-) (comM) [Vibrio parahaemolyticus strain LH80]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPNVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=460197 JHS95_RS16365 WP_237301885.1 3389370..3390893(-) (comM) [Vibrio parahaemolyticus strain LH80]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTTAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGTAAAGTAGGAC
GTCATTTGGTGGTGCCTAATGTCAATGGCGATCAAGCGGCGTTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAACA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGAAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAGATCATCATTTCGCGTGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGGGCGCTGAATCC
GAGCCCTACGGGCTATTATGAAGGGAATCAAGCGCGTACCAATCCTCAGGCCATTTTGCGTTATTTGGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACGGAACTCGTTAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTGCTTGGCAGCCGTGAGATTGAGGCATTTTGCCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTGCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCCCGCACGATAGCGGATTTAGATGGTGCTGAGCAG
ATTGAGCGTTCTCATTTAGCGGAAGCGCTCGGGTATCGTGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.886

100

0.939
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.615

100

0.846
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

50

97.83

0.489
  comM Legionella pneumophila strain ERS1305867

50

97.83

0.489
  comM Acinetobacter baylyi ADP1

49.299

98.422

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.898

100

0.44