Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | XCR_RS15575 | Genome accession | NC_017271 |
| Coordinates | 3651388..3651819 (-) | Length | 143 a.a. |
| NCBI ID | WP_043922199.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. raphani 756C | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3641705..3700042 | 3651388..3651819 | within | 0 |
Gene organization within MGE regions
Location: 3641705..3700042
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XCR_RS15530 (XCR_3435) | - | 3641705..3642007 (-) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XCR_RS15535 (XCR_3436) | - | 3642011..3642421 (-) | 411 | WP_029628876.1 | DNA-binding protein | - |
| XCR_RS15540 (XCR_3437) | sucD | 3642525..3643400 (-) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| XCR_RS15545 (XCR_3438) | sucC | 3643425..3644594 (-) | 1170 | WP_014508701.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| XCR_RS15550 (XCR_3439) | - | 3644828..3646438 (+) | 1611 | WP_014508702.1 | HAMP domain-containing sensor histidine kinase | - |
| XCR_RS15555 (XCR_3440) | pilR | 3646647..3648041 (+) | 1395 | WP_043921909.1 | sigma-54 dependent transcriptional regulator | Regulator |
| XCR_RS23200 | - | 3648233..3648595 (+) | 363 | WP_148263072.1 | hypothetical protein | - |
| XCR_RS15565 (XCR_3443) | - | 3648540..3649331 (+) | 792 | WP_202796265.1 | toxin | - |
| XCR_RS15570 (XCR_3444) | pilB | 3649514..3651250 (-) | 1737 | WP_043921911.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XCR_RS15575 | pilA2 | 3651388..3651819 (-) | 432 | WP_043922199.1 | pilin | Machinery gene |
| XCR_RS15580 | - | 3652168..3653425 (+) | 1258 | Protein_3088 | type II secretion system F family protein | - |
| XCR_RS15585 (XCR_3447) | - | 3653432..3654295 (+) | 864 | WP_011038216.1 | A24 family peptidase | - |
| XCR_RS15590 (XCR_3448) | coaE | 3654309..3654932 (+) | 624 | WP_014508710.1 | dephospho-CoA kinase | - |
| XCR_RS15595 | - | 3655465..3655866 (+) | 402 | WP_043921912.1 | SymE family type I addiction module toxin | - |
| XCR_RS15600 (XCR_3450) | - | 3655941..3656231 (+) | 291 | WP_014508712.1 | DUF1778 domain-containing protein | - |
| XCR_RS15605 (XCR_3451) | - | 3656228..3656719 (+) | 492 | WP_014508713.1 | GNAT family N-acetyltransferase | - |
| XCR_RS15610 (XCR_3452) | - | 3656862..3658196 (-) | 1335 | WP_012437598.1 | HAMP domain-containing sensor histidine kinase | - |
| XCR_RS15615 (XCR_3453) | - | 3658189..3658866 (-) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| XCR_RS15620 (XCR_3455) | rimK | 3659516..3660391 (-) | 876 | WP_043921913.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| XCR_RS15625 (XCR_3456) | glgX | 3660883..3663012 (+) | 2130 | WP_014508716.1 | glycogen debranching protein GlgX | - |
| XCR_RS15630 (XCR_3458) | - | 3663554..3663946 (-) | 393 | WP_011038224.1 | H-NS family nucleoid-associated regulatory protein | - |
| XCR_RS15635 (XCR_3459) | - | 3664037..3664432 (-) | 396 | WP_042594933.1 | hypothetical protein | - |
| XCR_RS23705 (XCR_3460) | - | 3664608..3664763 (-) | 156 | WP_042594934.1 | hypothetical protein | - |
| XCR_RS23900 | - | 3664881..3665222 (-) | 342 | WP_237704751.1 | hypothetical protein | - |
| XCR_RS15645 (XCR_3462) | - | 3665355..3665726 (-) | 372 | WP_014508721.1 | hypothetical protein | - |
| XCR_RS22275 | - | 3666410..3666751 (+) | 342 | WP_080565911.1 | hypothetical protein | - |
| XCR_RS15650 (XCR_3463) | - | 3666804..3668414 (-) | 1611 | WP_014508722.1 | MobA/MobL family protein | - |
| XCR_RS15655 | traD | 3668682..3669008 (+) | 327 | WP_043921914.1 | conjugal transfer protein TraD | - |
| XCR_RS22280 | - | 3669271..3669540 (+) | 270 | WP_237704833.1 | HNH endonuclease | - |
| XCR_RS15660 (XCR_3464) | - | 3669534..3670091 (+) | 558 | WP_014508723.1 | hypothetical protein | - |
| XCR_RS23905 (XCR_3465) | - | 3670139..3671374 (+) | 1236 | WP_237704752.1 | HNH endonuclease | - |
| XCR_RS15670 (XCR_3466) | - | 3671386..3672012 (-) | 627 | WP_162470855.1 | hypothetical protein | - |
| XCR_RS15675 (XCR_3467) | - | 3672077..3676042 (-) | 3966 | WP_014508726.1 | hypothetical protein | - |
| XCR_RS15680 | - | 3676080..3676718 (-) | 639 | WP_043921915.1 | DUF1629 domain-containing protein | - |
| XCR_RS22285 (XCR_3469) | - | 3676851..3678215 (-) | 1365 | WP_014508728.1 | DNA double-strand break repair nuclease NurA | - |
| XCR_RS15690 (XCR_3470) | - | 3678218..3680308 (-) | 2091 | WP_014508729.1 | DUF87 domain-containing protein | - |
| XCR_RS15695 | - | 3680322..3681212 (-) | 891 | WP_033836759.1 | DNA adenine methylase | - |
| XCR_RS23910 | - | 3681430..3681621 (-) | 192 | WP_080565913.1 | hypothetical protein | - |
| XCR_RS15700 (XCR_3471) | radC | 3681691..3682170 (-) | 480 | WP_014508730.1 | DNA repair protein RadC | - |
| XCR_RS15705 | - | 3682573..3682797 (-) | 225 | WP_039405436.1 | hypothetical protein | - |
| XCR_RS15710 (XCR_3472) | - | 3682991..3683437 (+) | 447 | WP_014508731.1 | hypothetical protein | - |
| XCR_RS15715 (XCR_3473) | - | 3684013..3685413 (+) | 1401 | WP_014508732.1 | site-specific integrase | - |
| XCR_RS15720 (XCR_3474) | - | 3685765..3687180 (+) | 1416 | WP_014508733.1 | hypothetical protein | - |
| XCR_RS15725 (XCR_3475) | - | 3687181..3688416 (-) | 1236 | WP_202796266.1 | abortive infection family protein | - |
| XCR_RS15730 (XCR_3476) | - | 3688461..3689654 (-) | 1194 | WP_014508735.1 | GIY-YIG nuclease family protein | - |
| XCR_RS15735 (XCR_3477) | - | 3689647..3691752 (-) | 2106 | WP_043921917.1 | DEAD/DEAH box helicase | - |
| XCR_RS15740 (XCR_3478) | - | 3691749..3694535 (-) | 2787 | WP_043921918.1 | DNA methyltransferase | - |
| XCR_RS15745 (XCR_3479) | - | 3694873..3695196 (-) | 324 | WP_108723645.1 | helix-turn-helix transcriptional regulator | - |
| XCR_RS15750 (XCR_3480) | - | 3695301..3696053 (+) | 753 | WP_014508739.1 | hypothetical protein | - |
| XCR_RS15755 (XCR_3481) | - | 3696096..3696410 (+) | 315 | WP_014508740.1 | hypothetical protein | - |
| XCR_RS15760 (XCR_3482) | - | 3696407..3696787 (+) | 381 | WP_193387299.1 | hypothetical protein | - |
| XCR_RS23210 | - | 3697046..3698044 (-) | 999 | WP_148263074.1 | hypothetical protein | - |
| XCR_RS15770 | - | 3698081..3698263 (-) | 183 | WP_141762696.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 14758.07 Da Isoelectric Point: 9.0331
>NTDB_id=45764 XCR_RS15575 WP_043922199.1 3651388..3651819(-) (pilA2) [Xanthomonas campestris pv. raphani 756C]
MKKQQGFTLIELMIVIAIIAILAAIALPAYQDYTIRSKVSETMIAMSAAKLAVAETAQSQGILATAVTNNTAAGYSGQTT
DKVASVVIANGVVTGTSKNTGAKVEPILKLTPTQADKDSPITWACSYTAGEAKHVPASCRTAG
MKKQQGFTLIELMIVIAIIAILAAIALPAYQDYTIRSKVSETMIAMSAAKLAVAETAQSQGILATAVTNNTAAGYSGQTT
DKVASVVIANGVVTGTSKNTGAKVEPILKLTPTQADKDSPITWACSYTAGEAKHVPASCRTAG
Nucleotide
Download Length: 432 bp
>NTDB_id=45764 XCR_RS15575 WP_043922199.1 3651388..3651819(-) (pilA2) [Xanthomonas campestris pv. raphani 756C]
ATGAAAAAGCAGCAAGGTTTTACTCTTATTGAATTGATGATTGTTATTGCCATCATCGCGATCCTAGCCGCCATTGCTCT
TCCGGCATATCAGGATTACACCATTCGAAGCAAAGTCAGCGAAACCATGATTGCTATGTCTGCAGCTAAGCTAGCGGTAG
CTGAGACTGCCCAGTCTCAAGGTATTCTGGCAACTGCCGTTACTAACAACACCGCCGCTGGATACTCCGGGCAAACTACC
GATAAGGTAGCGAGCGTGGTCATTGCCAATGGTGTGGTCACCGGTACTTCCAAGAACACTGGCGCAAAAGTTGAGCCGAT
CTTGAAGCTTACCCCCACGCAGGCTGATAAAGACTCGCCGATTACATGGGCTTGCAGCTACACCGCTGGTGAAGCTAAGC
ATGTCCCGGCAAGCTGCCGTACCGCTGGCTGA
ATGAAAAAGCAGCAAGGTTTTACTCTTATTGAATTGATGATTGTTATTGCCATCATCGCGATCCTAGCCGCCATTGCTCT
TCCGGCATATCAGGATTACACCATTCGAAGCAAAGTCAGCGAAACCATGATTGCTATGTCTGCAGCTAAGCTAGCGGTAG
CTGAGACTGCCCAGTCTCAAGGTATTCTGGCAACTGCCGTTACTAACAACACCGCCGCTGGATACTCCGGGCAAACTACC
GATAAGGTAGCGAGCGTGGTCATTGCCAATGGTGTGGTCACCGGTACTTCCAAGAACACTGGCGCAAAAGTTGAGCCGAT
CTTGAAGCTTACCCCCACGCAGGCTGATAAAGACTCGCCGATTACATGGGCTTGCAGCTACACCGCTGGTGAAGCTAAGC
ATGTCCCGGCAAGCTGCCGTACCGCTGGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.02 |
100 |
0.524 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
50.34 |
100 |
0.517 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
38.378 |
100 |
0.496 |
| comP | Acinetobacter baylyi ADP1 |
42.767 |
100 |
0.476 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
40.764 |
100 |
0.448 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.952 |
100 |
0.441 |
| pilE | Neisseria gonorrhoeae MS11 |
39.873 |
100 |
0.441 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.559 |
100 |
0.406 |
| pilA | Haemophilus influenzae 86-028NP |
39.716 |
98.601 |
0.392 |
| pilA | Haemophilus influenzae Rd KW20 |
38.462 |
100 |
0.385 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36 |
100 |
0.378 |
| pilA | Vibrio cholerae C6706 |
35.811 |
100 |
0.371 |
| pilA | Vibrio cholerae strain A1552 |
35.811 |
100 |
0.371 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
35.811 |
100 |
0.371 |