Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C663_RS08015 Genome accession   NC_020244
Coordinates   1566982..1567431 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis XF-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561982..1572431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS07975 (C663_1535) ctaE 1561998..1562621 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  C663_RS07980 (C663_1536) ctaF 1562624..1562956 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C663_RS07985 (C663_1537) ctaG 1562984..1563877 (+) 894 WP_015483193.1 cytochrome c oxidase assembly factor CtaG -
  C663_RS07990 (C663_1538) ylbA 1563909..1564271 (-) 363 WP_015383585.1 YugN family protein -
  C663_RS07995 (C663_1539) ylbB 1564411..1564857 (+) 447 WP_003221362.1 CBS domain-containing protein -
  C663_RS08000 (C663_1540) ylbC 1564941..1565981 (+) 1041 WP_041517847.1 CAP domain-containing protein -
  C663_RS08005 (C663_1541) ylbD 1566213..1566611 (+) 399 WP_003232233.1 YlbD family protein -
  C663_RS08010 (C663_1542) ylbE 1566627..1566866 (+) 240 WP_003232231.1 YlbE-like family protein -
  C663_RS08015 (C663_1543) ylbF 1566982..1567431 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C663_RS08020 ylbG 1567486..1567758 (+) 273 WP_009967171.1 YlbG family protein -
  C663_RS08025 (C663_1545) rsmD 1568082..1568636 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C663_RS08030 (C663_1546) coaD 1568641..1569126 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C663_RS08035 (C663_1547) spoVV 1569137..1570363 (-) 1227 WP_015383588.1 dipicolinic acid transporter SpoVV -
  C663_RS08040 (C663_1548) ylbK 1570544..1571326 (+) 783 WP_015383589.1 patatin family protein -
  C663_RS08045 (C663_1549) sepM 1571328..1572350 (+) 1023 WP_015483198.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=45763 C663_RS08015 WP_003221370.1 1566982..1567431(+) (ylbF) [Bacillus subtilis XF-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=45763 C663_RS08015 WP_003221370.1 1566982..1567431(+) (ylbF) [Bacillus subtilis XF-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGTGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment