Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I8N71_RS18945 Genome accession   NZ_CP065789
Coordinates   3609666..3612539 (-) Length   957 a.a.
NCBI ID   WP_003228057.1    Uniprot ID   A0ABU0VAU0
Organism   Bacillus subtilis strain LBUM979     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3604666..3617539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N71_RS18910 (I8N71_18910) pchE 3605125..3606336 (+) 1212 WP_003228068.1 MFS transporter -
  I8N71_RS18915 (I8N71_18915) yvlD 3606364..3606723 (-) 360 WP_003228066.1 phage holin family protein -
  I8N71_RS18920 (I8N71_18920) yvlC 3606725..3606922 (-) 198 WP_003228065.1 PspC domain-containing protein -
  I8N71_RS18925 (I8N71_18925) yvlB 3606927..3608024 (-) 1098 WP_003228061.1 DUF4097 family beta strand repeat-containing protein -
  I8N71_RS18930 (I8N71_18930) yvlA 3608049..3608375 (-) 327 WP_003244375.1 protein YvlA -
  I8N71_RS18935 (I8N71_18935) - 3608593..3608823 (+) 231 WP_003228059.1 hypothetical protein -
  I8N71_RS18940 (I8N71_18940) - 3609022..3609585 (-) 564 Protein_3684 flagellin -
  I8N71_RS18945 (I8N71_18945) uvrA 3609666..3612539 (-) 2874 WP_003228057.1 excinuclease ABC subunit UvrA Machinery gene
  I8N71_RS18950 (I8N71_18950) uvrB 3612547..3614532 (-) 1986 WP_003243787.1 excinuclease ABC subunit UvrB Machinery gene
  I8N71_RS18955 (I8N71_18955) csbA 3614718..3614948 (-) 231 WP_003228053.1 CsbA family protein -

Sequence

Protein


Download         Length: 957 a.a.        Molecular weight: 106032.21 Da        Isoelectric Point: 6.2081

>NTDB_id=451465 I8N71_RS18945 WP_003228057.1 3609666..3612539(-) (uvrA) [Bacillus subtilis strain LBUM979]
MAMDRIEVKGARAHNLKNIDVTIPRDQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDAIEG
LSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGKPHCPEHGIEITSQTIEQMVDRILEYPERTKLQVLAPIVSGR
KGAHVKVLEQIRKQGYVRVRIDGEMAELSDDIELEKNKKHSIEVVIDRIVVKEGVAARLSDSLETALRLGEGRVMIDVIG
EEELMFSEHHACPHCGFSIGELEPRLFSFNSPFGACPTCDGLGMKLEVDADLVIPNQDLSLKENAVAPWTPISSQYYPQL
LEAVCTHYGIDMDVPVKDLPKHQLDKVLYGSGDDLIYFRYENDFGQIREGEIQFEGVLRNIERRYKETGSDFIREQMEQY
MSQKSCPTCKGYRLKKEALAVLIDGRHIGKITELSVADALAFFKDLTLSEKDMQIANLILREIVERLSFLDKVGLDYLTL
SRAAGTLSGGEAQRIRLATQIGSRLSGVLYILDEPSIGLHQRDNDRLISALKNMRDLGNTLIVVEHDEDTMMAADYLIDI
GPGAGIHGGQVISAGTPEEVMEDPNSLTGSYLSGKKFIPLPPERRKPDGRYIEIKGASENNLKKVNAKFPLGTFTAVTGV
SGSGKSTLVNEILHKALAQKLHKAKAKPGSHKEIKGLDHLDKVIDIDQAPIGRTPRSNPATYTGVFDDIRDVFAQTNEAK
VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKSISDVLDMTVEDALSFFEN
IPKIKRKLQTLYDVGLGYITLGQPATTLSGGEAQRVKLASELHKRSTGRTLYILDEPTTGLHVDDIARLLVVLQRLVDNG
DTVLVIEHNLDIIKTADYIVDLGPEGGAGGGTIVASGTPEEITEVEESYTGRYLKPVIERDKTRMKSLLKAKETATS

Nucleotide


Download         Length: 2874 bp        

>NTDB_id=451465 I8N71_RS18945 WP_003228057.1 3609666..3612539(-) (uvrA) [Bacillus subtilis strain LBUM979]
ATGGCTATGGATCGGATAGAGGTGAAGGGAGCCAGGGCGCATAACCTGAAAAATATAGATGTAACGATTCCGAGAGATCA
GCTTGTCGTTGTCACGGGTTTGTCCGGATCAGGTAAATCCTCCCTTGCCTTTGACACGATATATGCTGAAGGACAGAGAC
GGTATGTCGAGTCGCTGTCTGCCTATGCCCGCCAGTTTTTAGGGCAAATGGATAAGCCGGATGTGGATGCAATTGAGGGG
CTCTCTCCCGCCATCAGCATTGATCAGAAAACAACGAGCCGCAATCCGAGGTCTACTGTCGGTACGGTAACTGAGATTTA
TGATTATCTGCGTCTTTTATATGCGAGAGTAGGGAAGCCTCATTGTCCGGAACACGGAATTGAGATTACATCCCAGACCA
TCGAGCAAATGGTGGACAGAATTCTGGAATACCCGGAACGGACGAAGCTTCAGGTGCTGGCGCCGATTGTCTCGGGCCGA
AAAGGCGCTCATGTCAAAGTGCTTGAACAGATTAGGAAACAAGGCTATGTCAGAGTCAGAATTGACGGCGAGATGGCTGA
GCTTTCCGACGATATCGAATTAGAAAAGAACAAGAAGCATTCCATTGAGGTAGTCATTGACCGGATTGTCGTGAAAGAAG
GCGTGGCAGCCCGGCTGTCAGATTCATTGGAAACGGCGCTTCGTTTAGGTGAAGGACGGGTTATGATCGATGTCATCGGT
GAGGAAGAGCTGATGTTCAGCGAGCATCATGCCTGTCCGCACTGCGGATTTTCAATTGGTGAGCTTGAGCCGCGTCTGTT
TTCGTTTAACAGTCCGTTCGGGGCGTGTCCGACGTGTGACGGTCTCGGAATGAAGCTTGAAGTGGATGCCGATCTTGTCA
TCCCCAATCAAGATTTGTCATTGAAGGAGAATGCGGTCGCCCCTTGGACACCGATCAGCTCACAATATTATCCTCAGCTG
CTTGAGGCAGTCTGCACCCACTACGGGATTGATATGGATGTGCCGGTCAAAGATTTGCCGAAGCATCAACTGGATAAAGT
GCTGTACGGCAGCGGGGATGACCTGATTTATTTCCGATATGAAAATGATTTTGGACAAATCCGCGAAGGTGAAATTCAAT
TTGAAGGCGTATTGCGCAACATTGAAAGACGCTATAAGGAGACAGGCTCCGATTTCATACGTGAGCAAATGGAGCAGTAT
ATGTCTCAGAAGTCTTGTCCGACGTGCAAAGGCTATCGGTTAAAGAAAGAGGCGCTTGCCGTACTGATTGACGGCCGCCA
CATTGGGAAAATTACCGAGCTGTCTGTCGCCGACGCACTTGCCTTCTTTAAAGATCTTACCCTTTCTGAGAAGGATATGC
AGATCGCCAATTTGATTTTGCGCGAAATTGTGGAGCGCTTAAGCTTTCTGGACAAAGTCGGCCTCGATTACCTGACATTG
AGCAGGGCAGCGGGTACATTGTCCGGAGGAGAGGCGCAGCGCATCAGGCTGGCGACTCAAATTGGCTCGCGTTTATCCGG
TGTGCTTTATATTTTAGATGAGCCGTCTATCGGTCTGCATCAGCGTGATAACGACCGCTTGATCAGCGCTCTGAAAAATA
TGAGAGACCTCGGGAACACGCTGATTGTTGTCGAACATGATGAGGACACGATGATGGCAGCAGATTATTTAATAGATATT
GGACCGGGAGCCGGCATTCACGGCGGACAGGTGATATCTGCGGGTACGCCGGAAGAAGTGATGGAAGATCCAAATTCATT
AACGGGCAGCTATTTATCAGGGAAAAAGTTTATCCCATTGCCTCCTGAAAGAAGAAAGCCGGACGGACGTTACATTGAAA
TTAAAGGTGCATCAGAAAACAACCTGAAAAAAGTGAATGCCAAGTTCCCGCTTGGGACGTTTACAGCAGTTACAGGTGTT
TCCGGTTCAGGAAAGAGTACACTCGTTAATGAAATTTTGCATAAGGCGCTGGCGCAAAAGCTTCATAAAGCGAAAGCGAA
GCCCGGCAGCCATAAAGAGATTAAAGGTTTGGATCATTTAGATAAAGTCATTGACATTGACCAGGCGCCAATCGGAAGAA
CGCCGAGATCCAACCCTGCGACATACACCGGTGTATTTGATGACATTCGTGATGTATTCGCGCAGACAAATGAAGCGAAG
GTCCGCGGCTATAAAAAAGGCCGTTTCAGCTTCAACGTGAAGGGCGGACGATGTGAAGCCTGCCGCGGAGACGGGATTAT
TAAAATTGAAATGCACTTCCTTCCTGACGTATACGTTCCATGCGAGGTGTGTCACGGCAAACGCTATAACCGTGAAACGC
TTGAAGTGACGTACAAAGGAAAAAGCATCTCTGATGTGCTTGATATGACGGTTGAAGATGCTCTTTCTTTCTTTGAAAAT
ATCCCGAAAATCAAACGCAAGCTCCAAACCCTTTATGATGTTGGTTTAGGTTATATTACGCTCGGCCAGCCGGCGACGAC
CTTGTCAGGCGGAGAAGCGCAGCGCGTGAAGCTCGCGTCAGAGCTGCACAAACGCTCAACCGGACGTACGCTCTACATTT
TAGATGAGCCGACGACAGGTTTGCATGTCGACGATATCGCCAGGCTTCTTGTCGTGCTGCAACGGTTGGTAGACAACGGA
GACACTGTACTGGTTATTGAGCACAATCTTGATATCATTAAGACGGCCGATTACATTGTGGATTTGGGCCCGGAAGGCGG
AGCCGGAGGCGGAACCATTGTCGCGTCTGGAACGCCTGAGGAAATCACTGAAGTTGAAGAATCGTATACAGGCCGTTATT
TAAAGCCTGTTATCGAACGTGACAAAACACGCATGAAATCGCTCTTGAAAGCAAAAGAAACAGCTACATCTTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(622-858)

UvrA DNA-binding domain (UvrA_DNA-bind)

(289-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

69.198

97.701

0.676
  uvrA Streptococcus pneumoniae TIGR4

69.198

97.701

0.676
  uvrA Streptococcus pneumoniae D39

69.198

97.701

0.676