Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | HNI00_RS15805 | Genome accession | NZ_CP053540 |
| Coordinates | 3740707..3741837 (+) | Length | 376 a.a. |
| NCBI ID | WP_297077565.1 | Uniprot ID | - |
| Organism | Thermoleptolyngbya oregonensis NK1-22 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3735707..3746837
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HNI00_RS15795 (HNI00_15805) | grpE | 3737133..3737828 (-) | 696 | WP_172356236.1 | nucleotide exchange factor GrpE | - |
| HNI00_RS15800 (HNI00_15810) | pilB/pilB1 | 3738599..3740602 (+) | 2004 | WP_172356238.1 | GspE/PulE family protein | Machinery gene |
| HNI00_RS15805 (HNI00_15815) | pilT | 3740707..3741837 (+) | 1131 | WP_297077565.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| HNI00_RS15810 (HNI00_15820) | - | 3742166..3743401 (+) | 1236 | WP_172356242.1 | type II secretion system F family protein | - |
| HNI00_RS15815 (HNI00_15825) | - | 3743550..3744155 (+) | 606 | WP_172356244.1 | hypothetical protein | - |
| HNI00_RS15820 (HNI00_15830) | - | 3744191..3744778 (-) | 588 | WP_316787532.1 | hypothetical protein | - |
| HNI00_RS15825 (HNI00_15835) | - | 3744799..3745236 (-) | 438 | WP_316787533.1 | DUF4079 domain-containing protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41117.44 Da Isoelectric Point: 6.7592
>NTDB_id=445026 HNI00_RS15805 WP_297077565.1 3740707..3741837(+) (pilT) [Thermoleptolyngbya oregonensis NK1-22]
MELMIEDLMEQLIEMGGSDMHLSAGLPPYFRINGHLAPISDEPMTSEQCQRLIFSMLNNTQRKNLEQNWELDCSYGVKGL
ARFRVNVYKDRGTYAACLRALSSKIPSFEKLGLPDVVREMAEKPRGLILVTGPTGSGKTTTLAAIIDLINRTRAEHILTV
EDPIEFVYEPVKSLIHQRQLGEDTKSFANALKAALREDPDVILVGEMRDLETISLAISAAETGHLVMGTLHTSSASQTVD
RMIDVFPAERQQQVRVQLSNSLVAVFSQTLVPKKNPKPGEFGRAMAQEIMVVTPAIANLIREGKTAQIYSAIQTGGKLGM
VTLEKVLADLYKAGTISFESAMSKTSRPDELQRLIGGAMQQPAPGGARPGAPVGTR
MELMIEDLMEQLIEMGGSDMHLSAGLPPYFRINGHLAPISDEPMTSEQCQRLIFSMLNNTQRKNLEQNWELDCSYGVKGL
ARFRVNVYKDRGTYAACLRALSSKIPSFEKLGLPDVVREMAEKPRGLILVTGPTGSGKTTTLAAIIDLINRTRAEHILTV
EDPIEFVYEPVKSLIHQRQLGEDTKSFANALKAALREDPDVILVGEMRDLETISLAISAAETGHLVMGTLHTSSASQTVD
RMIDVFPAERQQQVRVQLSNSLVAVFSQTLVPKKNPKPGEFGRAMAQEIMVVTPAIANLIREGKTAQIYSAIQTGGKLGM
VTLEKVLADLYKAGTISFESAMSKTSRPDELQRLIGGAMQQPAPGGARPGAPVGTR
Nucleotide
Download Length: 1131 bp
>NTDB_id=445026 HNI00_RS15805 WP_297077565.1 3740707..3741837(+) (pilT) [Thermoleptolyngbya oregonensis NK1-22]
ATGGAATTGATGATCGAAGACTTGATGGAGCAACTGATTGAGATGGGCGGGTCGGATATGCACCTGTCGGCTGGATTGCC
ACCCTACTTCCGTATCAATGGCCACCTCGCCCCCATCAGCGACGAGCCGATGACCTCGGAGCAATGCCAGCGGCTGATCT
TCAGTATGCTTAACAACACCCAGCGCAAAAACCTAGAGCAAAACTGGGAACTGGACTGCTCCTACGGTGTAAAAGGTCTG
GCCCGCTTCCGGGTAAACGTATATAAGGATCGGGGCACCTACGCCGCCTGTTTGCGGGCGCTGAGTTCCAAGATTCCTAG
CTTCGAGAAGCTAGGTCTGCCGGACGTGGTGCGCGAAATGGCGGAAAAGCCCAGAGGACTGATCCTGGTGACGGGGCCGA
CGGGTTCCGGAAAAACCACGACGCTGGCGGCCATCATCGACCTGATCAACCGCACCCGTGCAGAACACATTCTGACTGTT
GAAGATCCTATTGAATTTGTCTATGAACCTGTTAAAAGCTTGATCCACCAGCGGCAGCTTGGGGAAGACACCAAGAGCTT
TGCAAACGCGCTGAAGGCGGCTCTACGGGAAGACCCAGACGTGATCCTGGTGGGCGAGATGCGGGACCTGGAGACGATTT
CACTGGCGATCTCGGCGGCCGAAACTGGACACCTCGTGATGGGGACACTGCACACCAGTTCCGCTTCCCAGACCGTTGAC
CGGATGATTGACGTGTTCCCGGCTGAGCGTCAACAGCAGGTGCGGGTGCAGCTTTCCAACTCGCTGGTGGCAGTGTTTAG
CCAAACGCTGGTGCCCAAGAAGAATCCGAAGCCCGGCGAATTTGGGCGAGCGATGGCACAGGAAATCATGGTCGTTACTC
CGGCGATCGCCAACCTAATTCGCGAAGGCAAAACCGCCCAAATCTATTCCGCTATTCAAACGGGCGGCAAACTGGGCATG
GTCACCCTGGAGAAAGTGCTAGCTGACCTATACAAAGCGGGTACAATCTCGTTTGAATCGGCTATGTCGAAAACCTCTCG
CCCCGACGAACTCCAGCGGCTGATTGGCGGCGCAATGCAGCAACCTGCGCCGGGTGGTGCGCGTCCGGGTGCGCCCGTGG
GCACTCGATAG
ATGGAATTGATGATCGAAGACTTGATGGAGCAACTGATTGAGATGGGCGGGTCGGATATGCACCTGTCGGCTGGATTGCC
ACCCTACTTCCGTATCAATGGCCACCTCGCCCCCATCAGCGACGAGCCGATGACCTCGGAGCAATGCCAGCGGCTGATCT
TCAGTATGCTTAACAACACCCAGCGCAAAAACCTAGAGCAAAACTGGGAACTGGACTGCTCCTACGGTGTAAAAGGTCTG
GCCCGCTTCCGGGTAAACGTATATAAGGATCGGGGCACCTACGCCGCCTGTTTGCGGGCGCTGAGTTCCAAGATTCCTAG
CTTCGAGAAGCTAGGTCTGCCGGACGTGGTGCGCGAAATGGCGGAAAAGCCCAGAGGACTGATCCTGGTGACGGGGCCGA
CGGGTTCCGGAAAAACCACGACGCTGGCGGCCATCATCGACCTGATCAACCGCACCCGTGCAGAACACATTCTGACTGTT
GAAGATCCTATTGAATTTGTCTATGAACCTGTTAAAAGCTTGATCCACCAGCGGCAGCTTGGGGAAGACACCAAGAGCTT
TGCAAACGCGCTGAAGGCGGCTCTACGGGAAGACCCAGACGTGATCCTGGTGGGCGAGATGCGGGACCTGGAGACGATTT
CACTGGCGATCTCGGCGGCCGAAACTGGACACCTCGTGATGGGGACACTGCACACCAGTTCCGCTTCCCAGACCGTTGAC
CGGATGATTGACGTGTTCCCGGCTGAGCGTCAACAGCAGGTGCGGGTGCAGCTTTCCAACTCGCTGGTGGCAGTGTTTAG
CCAAACGCTGGTGCCCAAGAAGAATCCGAAGCCCGGCGAATTTGGGCGAGCGATGGCACAGGAAATCATGGTCGTTACTC
CGGCGATCGCCAACCTAATTCGCGAAGGCAAAACCGCCCAAATCTATTCCGCTATTCAAACGGGCGGCAAACTGGGCATG
GTCACCCTGGAGAAAGTGCTAGCTGACCTATACAAAGCGGGTACAATCTCGTTTGAATCGGCTATGTCGAAAACCTCTCG
CCCCGACGAACTCCAGCGGCTGATTGGCGGCGCAATGCAGCAACCTGCGCCGGGTGGTGCGCGTCCGGGTGCGCCCGTGG
GCACTCGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
53.026 |
92.287 |
0.489 |
| pilT | Pseudomonas aeruginosa PAK |
53.026 |
92.287 |
0.489 |
| pilT | Legionella pneumophila strain Lp02 |
52.754 |
91.755 |
0.484 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.754 |
91.755 |
0.484 |
| pilT | Acinetobacter baylyi ADP1 |
52.161 |
92.287 |
0.481 |
| pilT | Acinetobacter baumannii strain A118 |
51.009 |
92.287 |
0.471 |
| pilT | Acinetobacter baumannii D1279779 |
51.009 |
92.287 |
0.471 |
| pilT | Acinetobacter nosocomialis M2 |
51.009 |
92.287 |
0.471 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.087 |
97.34 |
0.468 |
| pilT | Neisseria gonorrhoeae MS11 |
50.147 |
90.16 |
0.452 |
| pilT | Neisseria meningitidis 8013 |
50.147 |
90.16 |
0.452 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.118 |
90.426 |
0.444 |
| pilT | Vibrio cholerae strain A1552 |
49.118 |
90.426 |
0.444 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.316 |
93.351 |
0.367 |