Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HHI31_RS03370 Genome accession   NZ_CP051880
Coordinates   707477..708538 (-) Length   353 a.a.
NCBI ID   WP_198803436.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. venerealis strain P4531     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 702477..713538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHI31_RS03345 (HHI31_03345) - 703126..703668 (-) 543 WP_198803435.1 DUF1882 domain-containing protein -
  HHI31_RS03350 (HHI31_03350) - 703668..704912 (-) 1245 WP_127349048.1 serine hydroxymethyltransferase -
  HHI31_RS03355 (HHI31_03355) lysS 704909..706420 (-) 1512 WP_233091053.1 lysine--tRNA ligase -
  HHI31_RS03360 (HHI31_03360) - 706434..706898 (-) 465 WP_002849768.1 Fur family transcriptional regulator -
  HHI31_RS03365 (HHI31_03365) - 706902..707477 (-) 576 WP_127349049.1 CvpA family protein -
  HHI31_RS03370 (HHI31_03370) pilT 707477..708538 (-) 1062 WP_198803436.1 type IV pilus twitching motility protein PilT Machinery gene
  HHI31_RS03375 (HHI31_03375) gatC 708543..708830 (-) 288 WP_127349051.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  HHI31_RS03380 (HHI31_03380) - 709013..709612 (+) 600 WP_233091031.1 hypothetical protein -
  HHI31_RS03385 (HHI31_03385) - 709615..710622 (+) 1008 WP_198803437.1 L-seryl-tRNA selenium transferase -
  HHI31_RS03390 (HHI31_03390) - 710629..710955 (+) 327 WP_002849781.1 hypothetical protein -
  HHI31_RS03395 (HHI31_03395) - 710942..711574 (+) 633 WP_127349053.1 type III pantothenate kinase -
  HHI31_RS03400 (HHI31_03400) hisG 711562..712173 (+) 612 WP_127349054.1 ATP phosphoribosyltransferase -
  HHI31_RS03405 (HHI31_03405) brnQ 712182..713486 (+) 1305 WP_198803438.1 branched-chain amino acid transport system II carrier protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38908.35 Da        Isoelectric Point: 6.3450

>NTDB_id=441306 HHI31_RS03370 WP_198803436.1 707477..708538(-) (pilT) [Campylobacter fetus subsp. venerealis strain P4531]
MNIETLLKTVMHNKASDLHLVGRSEPQIRIDGSLRPLEGKVLDGSDIENLCYTILTDAQKSELEENKDLDFALELPGIGR
FRGNCYYTMNGSLAAAFRMIPLNIPSLDDLNAPAIFKELVKKEKGLVLVTGGTGAGKSTTLAALLNEINITERKHIITIE
DPIEFVHQNKNSLFSHRNVGTDTKSFARALKYALREDPDIILVGDLRDPETISIAIAAAETGHLVFGTLHTNSAVQTINR
IVDSFNETEQAQVRNMLSVSLNAIISQTLVPKADSGRFAVHEVLINNHAISNLIRENKSHQIYSQIQLNQQNTGMQTQTQ
AMEKAVQMGIITKENAIRYSTNQQELAGKLGAI

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=441306 HHI31_RS03370 WP_198803436.1 707477..708538(-) (pilT) [Campylobacter fetus subsp. venerealis strain P4531]
ATGAATATTGAAACTCTTTTAAAAACTGTGATGCATAACAAGGCGAGCGATCTACATTTAGTCGGTAGAAGTGAGCCTCA
AATCAGAATTGATGGTAGCTTAAGACCGCTTGAAGGTAAAGTTTTAGATGGAAGCGATATAGAAAATTTATGCTACACTA
TTTTAACTGATGCCCAAAAAAGCGAATTGGAAGAGAACAAAGATTTGGATTTTGCTCTAGAATTACCAGGAATAGGGCGT
TTTAGAGGTAATTGCTACTATACTATGAACGGAAGCTTAGCGGCTGCTTTTAGAATGATACCTCTAAATATACCAAGTCT
TGATGATCTTAATGCTCCGGCTATTTTTAAAGAGTTGGTAAAAAAAGAAAAAGGTCTTGTTCTTGTTACTGGAGGAACGG
GGGCTGGAAAATCAACGACTTTAGCAGCTTTGCTAAATGAGATAAATATTACTGAGCGAAAGCATATAATCACCATAGAA
GATCCTATAGAATTTGTTCATCAAAATAAGAATTCTCTATTTTCTCATAGAAACGTAGGCACCGATACTAAATCGTTTGC
TAGGGCTTTGAAATACGCTCTTAGAGAAGATCCGGATATAATATTGGTAGGTGATTTAAGAGATCCGGAGACCATATCTA
TAGCTATAGCGGCTGCAGAAACAGGACACTTGGTATTTGGCACTTTGCACACAAACTCAGCCGTACAAACAATAAATAGA
ATAGTCGATAGTTTTAATGAGACAGAGCAGGCTCAAGTAAGAAATATGCTTAGCGTATCTCTAAATGCTATTATATCTCA
AACTCTTGTGCCAAAAGCAGATAGCGGCAGATTTGCCGTTCATGAAGTTTTGATAAATAATCATGCAATTTCAAATTTGA
TCAGAGAAAATAAATCTCATCAAATTTACTCTCAAATACAATTAAATCAACAAAATACAGGTATGCAAACACAAACTCAA
GCGATGGAAAAGGCGGTGCAAATGGGTATTATAACAAAAGAAAACGCTATAAGATATTCAACAAATCAGCAAGAATTAGC
TGGAAAGTTAGGTGCAATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Legionella pneumophila strain Lp02

50.729

97.167

0.493
  pilT Legionella pneumophila strain ERS1305867

50.729

97.167

0.493
  pilT Neisseria gonorrhoeae MS11

50

98.584

0.493
  pilT Neisseria meningitidis 8013

49.713

98.584

0.49
  pilT Vibrio cholerae strain A1552

51.964

93.768

0.487
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

51.964

93.768

0.487
  pilT Acinetobacter baumannii D1279779

49.565

97.734

0.484
  pilT Acinetobacter nosocomialis M2

49.565

97.734

0.484
  pilT Acinetobacter baumannii strain A118

49.565

97.734

0.484
  pilT Pseudomonas aeruginosa PAK

49.702

95.184

0.473
  pilT Acinetobacter baylyi ADP1

50.151

93.768

0.47
  pilT Pseudomonas stutzeri DSM 10701

48.81

95.184

0.465
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.092

98.584

0.405
  pilU Pseudomonas stutzeri DSM 10701

40

100

0.402
  pilU Acinetobacter baylyi ADP1

39.181

96.884

0.38