NTDB

Overview

Name	pilA2	Type	Machinery gene
Locus tag	G9Q37_RS21950	Genome accession	NZ_CP049989
Coordinates	3560322..3560762 (-)	Length	146 a.a.
NCBI ID	WP_420810293.1	Uniprot ID	-
Organism	Hydrogenophaga crocea strain BA0156
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3555322..3565762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G9Q37_RS16825 (G9Q37_16825)	-	3556024..3556368 (+)	345	WP_166228963.1	phage holin family protein	-
G9Q37_RS16830 (G9Q37_16830)	-	3556382..3557974 (-)	1593	WP_166228965.1	M48 family metalloprotease	-
G9Q37_RS16835 (G9Q37_16835)	moaC	3558049..3558555 (+)	507	WP_166228967.1	cyclic pyranopterin monophosphate synthase MoaC	-
G9Q37_RS16840 (G9Q37_16840)	-	3558573..3560291 (-)	1719	WP_166228969.1	PglL family O-oligosaccharyltransferase	-
G9Q37_RS21950 (G9Q37_16845)	pilA2	3560322..3560762 (-)	441	WP_420810293.1	pilin	Machinery gene
G9Q37_RS16850 (G9Q37_16850)	-	3560945..3561736 (-)	792	WP_166231425.1	3',5'-cyclic-nucleotide phosphodiesterase	-
G9Q37_RS16855 (G9Q37_16855)	-	3561855..3562493 (-)	639	WP_166228971.1	FHA domain-containing protein	-
G9Q37_RS16860 (G9Q37_16860)	-	3562550..3563335 (-)	786	WP_166228973.1	Stp1/IreP family PP2C-type Ser/Thr phosphatase	-

Sequence

Protein

Download Length: 146 a.a. Molecular weight: 15313.71 Da Isoelectric Point: 9.4143

                                >NTDB_id=429191 G9Q37_RS21950 WP_420810293.1 3560322..3560762(-) (pilA2) [Hydrogenophaga crocea strain BA0156]

MKMKRAIQKGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKVSEVILAASAARTAVSESAQTLGEMPAQASITFDTQAS

TYVASVRYELTGGNGIITAVAQGDPRISTAPNNTITLTGVYQSATGQVIWTCGGGILPKYRPASCR

Nucleotide

Download Length: 441 bp

                                >NTDB_id=429191 G9Q37_RS21950 WP_420810293.1 3560322..3560762(-) (pilA2) [Hydrogenophaga crocea strain BA0156]

ATGAAGATGAAGCGCGCAATCCAAAAAGGTTTCACCCTGATCGAACTGATGATCGTGGTGGCCATCATCGGTATCCTGGC

CGCCGTGGCGCTGCCGGCGTACCAGGACTACACGACGCGTGCGAAGGTATCGGAGGTGATCCTGGCTGCTTCGGCGGCGC

GGACCGCAGTTAGTGAATCCGCGCAAACGCTCGGTGAAATGCCTGCACAAGCGAGTATTACCTTTGACACCCAAGCGTCT

ACCTATGTTGCTAGCGTTCGTTACGAACTCACTGGCGGCAATGGCATCATCACTGCAGTGGCGCAGGGTGATCCGCGTAT

TTCGACGGCACCCAACAATACTATCACGCTCACTGGGGTTTACCAGTCAGCCACCGGCCAAGTGATCTGGACGTGCGGTG

GTGGTATTCTGCCTAAATACCGCCCGGCTTCTTGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Pilin (bacterial filament) (Pilin)

(39-146)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA2	Legionella pneumophila str. Paris	54.225	97.26	0.527
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	39.683	100	0.514
pilA2	Legionella pneumophila strain ERS1305867	53.191	96.575	0.514
pilE	Neisseria gonorrhoeae MS11	40.361	100	0.459
comP	Acinetobacter baylyi ADP1	42.667	100	0.438
pilE	Neisseria gonorrhoeae strain FA1090	39.375	100	0.432
pilA	Ralstonia pseudosolanacearum GMI1000	35.714	100	0.411
pilA/pilA1	Eikenella corrodens VA1	37.821	100	0.404
pilA/pilAI	Pseudomonas stutzeri DSM 10701	39.726	100	0.397
pilA	Haemophilus influenzae 86-028NP	39.86	97.945	0.39
pilA/pilAII	Pseudomonas stutzeri DSM 10701	36.184	100	0.377
pilA	Acinetobacter baumannii strain A118	38.732	97.26	0.377
pilA	Vibrio cholerae C6706	35.065	100	0.37
pilA	Vibrio cholerae strain A1552	35.065	100	0.37
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	35.065	100	0.37

Detailed information NTG0429191