Detailed information NTG0418581

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9192_RS05385
• Genome accession: NZ_CP060974
• Coordinates: 1108066..1109058 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1103066..1114058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9192_RS05355 (H9192_05290)	ispD	1103127..1103837 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H9192_RS05360 (H9192_05295)	ispF	1103837..1104316 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9192_RS05365 (H9192_05300)	truD	1104313..1105362 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H9192_RS05370 (H9192_05305)	surE	1105343..1106104 (+)	762	WP_025693382.1	5'/3'-nucleotidase SurE	-
H9192_RS05375 (H9192_05310)	pcm	1106098..1106724 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H9192_RS05380 (H9192_05315)	nlpD	1106909..1108003 (+)	1095	WP_347176337.1	murein hydrolase activator NlpD	-
H9192_RS05385 (H9192_05320)	rpoS	1108066..1109058 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H9192_RS05390 (H9192_05325)	ygbN	1109152..1110516 (-)	1365	WP_000104441.1	GntP family transporter	-
H9192_RS05395 (H9192_05330)	ygbM	1110605..1111381 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
H9192_RS05400 (H9192_05335)	ygbL	1111386..1112024 (-)	639	WP_001278994.1	aldolase	-
H9192_RS05405 (H9192_05340)	otnK	1112021..1113283 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=418581 H9192_RS05385 WP_000081550.1 1108066..1109058(+) (rpoS) [Escherichia coli strain EC4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=418581 H9192_RS05385 WP_000081550.1 1108066..1109058(+) (rpoS) [Escherichia coli strain EC4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715