Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | GOY17_RS03965 | Genome accession | NZ_CP046603 |
| Coordinates | 873615..874031 (-) | Length | 138 a.a. |
| NCBI ID | WP_157029415.1 | Uniprot ID | - |
| Organism | Lysobacter soli strain XL170 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 868615..879031
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GOY17_RS03945 (GOY17_03945) | coaE | 868910..869527 (-) | 618 | WP_157029411.1 | dephospho-CoA kinase | - |
| GOY17_RS03950 (GOY17_03950) | - | 869574..870437 (-) | 864 | WP_157029412.1 | A24 family peptidase | - |
| GOY17_RS03955 (GOY17_03955) | pilC | 870483..871739 (-) | 1257 | WP_157029413.1 | type II secretion system F family protein | Machinery gene |
| GOY17_RS03960 (GOY17_03960) | pilB | 871745..873463 (-) | 1719 | WP_157029414.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GOY17_RS03965 (GOY17_03965) | comP | 873615..874031 (-) | 417 | WP_157029415.1 | pilin | Machinery gene |
| GOY17_RS03970 (GOY17_03970) | pilR | 874510..875970 (-) | 1461 | WP_157029416.1 | sigma-54 dependent transcriptional regulator | Regulator |
| GOY17_RS03975 (GOY17_03975) | - | 876054..877679 (-) | 1626 | WP_232338523.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 14253.16 Da Isoelectric Point: 4.1270
>NTDB_id=405989 GOY17_RS03965 WP_157029415.1 873615..874031(-) (comP) [Lysobacter soli strain XL170]
MKKQQGFTLIELMIVVAIIAILAAIALPAYRDYTIRARVSEAVVLAGAAKATVAENIANNNAVDADSCDGVDTAITATDN
VASMDCGTAAVGAITVVTTAQAGNVTLNFTPTLENSGQVTWVCDNSAGDQKYVPSECR
MKKQQGFTLIELMIVVAIIAILAAIALPAYRDYTIRARVSEAVVLAGAAKATVAENIANNNAVDADSCDGVDTAITATDN
VASMDCGTAAVGAITVVTTAQAGNVTLNFTPTLENSGQVTWVCDNSAGDQKYVPSECR
Nucleotide
Download Length: 417 bp
>NTDB_id=405989 GOY17_RS03965 WP_157029415.1 873615..874031(-) (comP) [Lysobacter soli strain XL170]
ATGAAGAAGCAGCAGGGCTTTACCCTCATCGAACTGATGATCGTCGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCTTACCGCGACTACACCATCCGCGCCCGCGTGTCGGAAGCGGTCGTGCTGGCCGGTGCCGCCAAGGCCACAGTGG
CTGAGAACATCGCCAACAACAACGCCGTCGACGCCGACTCGTGCGATGGCGTCGATACCGCCATCACCGCGACCGACAAC
GTCGCCAGCATGGATTGCGGCACCGCCGCTGTCGGCGCCATCACGGTCGTGACGACCGCACAGGCCGGCAACGTGACGCT
GAACTTCACCCCGACGCTGGAGAACAGCGGCCAGGTGACCTGGGTGTGCGACAACTCGGCCGGCGACCAGAAGTACGTGC
CCTCCGAGTGCCGTTAA
ATGAAGAAGCAGCAGGGCTTTACCCTCATCGAACTGATGATCGTCGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCTTACCGCGACTACACCATCCGCGCCCGCGTGTCGGAAGCGGTCGTGCTGGCCGGTGCCGCCAAGGCCACAGTGG
CTGAGAACATCGCCAACAACAACGCCGTCGACGCCGACTCGTGCGATGGCGTCGATACCGCCATCACCGCGACCGACAAC
GTCGCCAGCATGGATTGCGGCACCGCCGCTGTCGGCGCCATCACGGTCGTGACGACCGCACAGGCCGGCAACGTGACGCT
GAACTTCACCCCGACGCTGGAGAACAGCGGCCAGGTGACCTGGGTGTGCGACAACTCGGCCGGCGACCAGAAGTACGTGC
CCTCCGAGTGCCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
54 |
100 |
0.587 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
44.785 |
100 |
0.529 |
| pilA2 | Legionella pneumophila str. Paris |
53.676 |
98.551 |
0.529 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
52.941 |
98.551 |
0.522 |
| pilA/pilA1 | Eikenella corrodens VA1 |
40.385 |
100 |
0.457 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
32.105 |
100 |
0.442 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
38.065 |
100 |
0.428 |
| pilE | Neisseria gonorrhoeae MS11 |
36.943 |
100 |
0.42 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.176 |
98.551 |
0.406 |
| pilA | Acinetobacter baumannii strain A118 |
36.806 |
100 |
0.384 |
| pilA | Pseudomonas aeruginosa PAK |
33.544 |
100 |
0.384 |
| pilA | Haemophilus influenzae 86-028NP |
37.226 |
99.275 |
0.37 |