Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GOY17_RS03970 Genome accession   NZ_CP046603
Coordinates   874510..875970 (-) Length   486 a.a.
NCBI ID   WP_157029416.1    Uniprot ID   -
Organism   Lysobacter soli strain XL170     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 869510..880970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOY17_RS03950 (GOY17_03950) - 869574..870437 (-) 864 WP_157029412.1 A24 family peptidase -
  GOY17_RS03955 (GOY17_03955) pilC 870483..871739 (-) 1257 WP_157029413.1 type II secretion system F family protein Machinery gene
  GOY17_RS03960 (GOY17_03960) pilB 871745..873463 (-) 1719 WP_157029414.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GOY17_RS03965 (GOY17_03965) comP 873615..874031 (-) 417 WP_157029415.1 pilin Machinery gene
  GOY17_RS03970 (GOY17_03970) pilR 874510..875970 (-) 1461 WP_157029416.1 sigma-54 dependent transcriptional regulator Regulator
  GOY17_RS03975 (GOY17_03975) - 876054..877679 (-) 1626 WP_232338523.1 ATP-binding protein -
  GOY17_RS03980 (GOY17_03980) sucC 877896..879062 (+) 1167 WP_115841435.1 ADP-forming succinate--CoA ligase subunit beta -
  GOY17_RS03985 (GOY17_03985) sucD 879075..879950 (+) 876 WP_157029417.1 succinate--CoA ligase subunit alpha -
  GOY17_RS03990 (GOY17_03990) - 880269..880604 (+) 336 WP_157029418.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 52288.00 Da        Isoelectric Point: 6.7659

>NTDB_id=405990 GOY17_RS03970 WP_157029416.1 874510..875970(-) (pilR) [Lysobacter soli strain XL170]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASTLGEARGQLARNRYDLCLTDMRLPDGSGMDLVAEISQKHPETPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLAVLRDLVRHALDLNERRKSAPPADIVAARLYGQSPAMATLRGTIAKVARSQ
APVYIVGESGVGKELVARTIHAEGARSTGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQSADGGTLFLDEI
AELPLAMQVKLLRAIQEKSIRPVGANAEVPVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERQDDLPGL
AEKVLQRLSLAQGRVFPPTLSADALDTLRAYAFPGNVRELENILERALALAEGDSLTAEDLRLPKAANTVPASPPLAATG
ATSATAPANPNAPLMVPGQPAQAIDPRTLNPRDTASSPLPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKL
KKLGID

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=405990 GOY17_RS03970 WP_157029416.1 874510..875970(-) (pilR) [Lysobacter soli strain XL170]
ATGGCTGAAACACGTAGTGCATTGGTGGTCGACGACGAACGCGACATCCGCGAACTGCTCGTCATGACCTTGGGCCGCAT
GGGCCTTCGATGCGACACCGCCTCCACGCTCGGCGAAGCCCGCGGCCAGCTCGCGCGCAATCGCTATGACCTGTGCCTGA
CGGACATGCGCCTGCCGGACGGCTCGGGCATGGACCTGGTCGCCGAGATCAGCCAGAAGCATCCGGAAACGCCGGTCGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGAGGCCTTGAAGGCCGGTGCGTTCGACTTCGTTGCCAAGCCCGT
GGACCTGGCCGTGCTGCGCGACCTGGTCCGCCACGCGCTGGACCTCAACGAACGCCGCAAGAGCGCGCCGCCGGCCGACA
TCGTCGCCGCGCGCCTGTACGGCCAATCGCCGGCGATGGCGACCCTCCGCGGCACGATCGCGAAGGTCGCCCGCAGCCAG
GCGCCGGTGTACATCGTCGGCGAGTCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACGATCCACGCCGAAGGCGCGCGTTC
GACCGGCCCGTTCGTGCCAGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCGCATGCCGACAAGCCGGGCCTGTTCCAGAGCGCCGACGGCGGCACGCTGTTCCTGGACGAAATC
GCCGAGCTTCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCCGGTGGGCGCGAACGC
CGAAGTTCCGGTCGACGTGCGCATCCTGTCGGCGACGCACAAGGATCTGGCGGCGCTCGTCGCCGACGGCCGTTTCCGCC
AGGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCAGGACGACCTGCCCGGCCTG
GCCGAGAAGGTGTTGCAGCGTCTTTCGCTGGCGCAGGGCCGCGTGTTCCCGCCGACGCTATCGGCCGATGCGCTCGACAC
GCTGCGTGCGTATGCCTTCCCGGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCGCTCGCGCTTGCCGAAGGCG
ACAGCCTGACCGCCGAGGACCTGCGCCTGCCGAAGGCCGCGAACACCGTGCCCGCCTCGCCACCCCTCGCGGCTACAGGC
GCCACGTCGGCGACTGCACCGGCGAATCCCAACGCGCCACTGATGGTGCCGGGCCAGCCGGCGCAGGCGATCGATCCGCG
CACGCTCAACCCGCGCGATACGGCCAGCAGCCCCCTGCCCTCGTACATCGAGGAAATCGAACGCGCCGCCATCCAGCAGG
CGCTGCAGGAAAACCGCTACAACAAGACGCGCACCGCGGCAGCGCTCGGCATCACCTTCCGCGCGCTGCGATACAAGCTC
AAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(443-483)

Sigma-54 interaction domain (Sigma54_activat)

(140-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.42

99.383

0.591
  pilR Acinetobacter baumannii strain A118

47.746

100

0.479
  luxO Vibrio cholerae strain A1552

36.611

98.354

0.36

Multiple sequence alignment