Detailed information NTG0405987

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: GOY17_RS03955
• Genome accession: NZ_CP046603
• Coordinates: 870483..871739 (-)
• Length: 418 a.a.
• NCBI ID: WP_157029413.1
• Uniprot ID: -
• Organism: Lysobacter soli strain XL170
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 865483..876739

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOY17_RS03940 (GOY17_03940)	-	867887..868891 (+)	1005	WP_157029410.1	Nudix family hydrolase	-
GOY17_RS03945 (GOY17_03945)	coaE	868910..869527 (-)	618	WP_157029411.1	dephospho-CoA kinase	-
GOY17_RS03950 (GOY17_03950)	-	869574..870437 (-)	864	WP_157029412.1	A24 family peptidase	-
GOY17_RS03955 (GOY17_03955)	pilC	870483..871739 (-)	1257	WP_157029413.1	type II secretion system F family protein	Machinery gene
GOY17_RS03960 (GOY17_03960)	pilB	871745..873463 (-)	1719	WP_157029414.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GOY17_RS03965 (GOY17_03965)	comP	873615..874031 (-)	417	WP_157029415.1	pilin	Machinery gene
GOY17_RS03970 (GOY17_03970)	pilR	874510..875970 (-)	1461	WP_157029416.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45397.60 Da
• Isoelectric Point: 10.2019

>NTDB_id=405987 GOY17_RS03955 WP_157029413.1 870483..871739(-) (pilC) [Lysobacter soli strain XL170]
MSATRTAAKSAAPRRPSPLDTFVWQGTDKRGKVMKGEQQAKNVNALRAELRKQGITPRSVKTKGKPLFGGAGRPITPLEI
AIFSRQIATMMKSGVPIVGSLEIIASGHKNPRMSTLLNTIRSDIESGLSLHEALSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENIESLKGKIKKAMFYPAMVVAVALIVSSILLIFVVPQFEEVFKSFGADLPAFTQMLIKMSDFMVTYWWLV
GGLIAGSIVAFIMAKKRSVAFSRFLDRMTLKLPVIGQIMHNAAIARFARTLALTFKAGVPLVEALDTVAGATGNVVYEDA
VRNIRDDVSVGYPVNMAMKQVNVFPHMVVQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALSSLLEPLIMVFLGVIVG
GMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=405987 GOY17_RS03955 WP_157029413.1 870483..871739(-) (pilC) [Lysobacter soli strain XL170]
ATGTCCGCAACTCGCACAGCTGCCAAGTCCGCCGCCCCGCGCCGTCCAAGTCCGCTAGACACGTTCGTCTGGCAAGGGAC
GGACAAGCGCGGAAAAGTGATGAAGGGCGAGCAACAGGCCAAAAACGTCAATGCTCTCCGTGCAGAGCTGCGTAAGCAGG
GGATCACGCCGCGCTCGGTCAAGACTAAGGGAAAGCCACTGTTCGGAGGCGCGGGTCGCCCCATCACGCCCTTGGAGATC
GCGATTTTCAGCCGCCAGATCGCGACAATGATGAAGTCCGGCGTGCCGATCGTGGGCTCGCTCGAGATTATCGCCAGCGG
TCACAAGAACCCGCGCATGAGCACTCTGCTCAACACGATCCGCTCGGACATCGAAAGCGGCCTGTCGCTGCACGAGGCGT
TGAGCAAGCATCCGGTGCAGTTCGACGAGCTTTACCGCAACCTGGTGAAGGCAGGTGAAGGCGCCGGTGTGCTCGAGACG
GTCCTCGATACCGTCGCCACGTACAAGGAAAACATCGAGTCGCTGAAGGGCAAGATCAAGAAGGCGATGTTTTATCCGGC
CATGGTCGTGGCGGTCGCCCTGATCGTGAGCTCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCGAGGAAGTCTTCAAGA
GCTTCGGTGCGGATCTGCCTGCGTTCACCCAGATGCTCATCAAGATGAGCGATTTCATGGTGACCTACTGGTGGCTGGTG
GGTGGGCTCATCGCAGGCAGCATCGTTGCGTTCATCATGGCAAAAAAGAGATCCGTCGCCTTCTCGCGCTTCCTCGACCG
CATGACGTTGAAGCTGCCTGTAATAGGGCAAATCATGCATAACGCCGCCATCGCGCGCTTCGCTCGCACGCTCGCGCTGA
CTTTCAAGGCCGGTGTCCCGCTGGTGGAAGCGCTGGACACCGTAGCCGGCGCCACCGGCAACGTGGTCTACGAAGATGCC
GTGCGCAACATCCGCGACGATGTGTCGGTGGGCTACCCCGTCAACATGGCGATGAAGCAGGTGAACGTCTTCCCGCACAT
GGTCGTGCAGATGACCGCGATCGGTGAGGAAGCTGGCGCGCTCGACACCATGCTCTTCAAGGTGGCCGAGTTCTACGAGC
AGGAAGTGAATAACGCCGTGGATGCGCTTTCCAGCCTGCTGGAACCGCTGATCATGGTGTTCCTGGGCGTCATCGTCGGC
GGCATGGTCATTGGTATGTACCTGCCCATCTTCAAGCTCGGCGCGGTCGTGGGCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	55.693	96.651	0.538
pilC	Pseudomonas stutzeri DSM 10701	53.788	94.737	0.51
pilC	Acinetobacter baumannii D1279779	52.334	97.368	0.51
pilC	Acinetobacter baylyi ADP1	51.106	97.368	0.498
pilG	Neisseria gonorrhoeae MS11	44.75	95.694	0.428
pilG	Neisseria meningitidis 44/76-A	44.5	95.694	0.426
pilC	Vibrio campbellii strain DS40M4	41.787	99.043	0.414
pilC	Vibrio cholerae strain A1552	41.646	95.933	0.4
pilC	Thermus thermophilus HB27	38.257	98.804	0.378