Detailed information    

insolico Bioinformatically predicted

Overview


Name   comX/comX2   Type   Regulator
Locus tag   GLO74_RS10795 Genome accession   NZ_CP046354
Coordinates   2104967..2105446 (-) Length   159 a.a.
NCBI ID   WP_000588925.1    Uniprot ID   A0AAX3HEV8
Organism   Streptococcus pneumoniae strain 310     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2099967..2110446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLO74_RS10795 (GLO74_11000) comX/comX2 2104967..2105446 (-) 480 WP_000588925.1 sigma-70 family RNA polymerase sigma factor Regulator
  GLO74_RS10800 (GLO74_11005) ftsH 2105568..2107526 (-) 1959 WP_000744557.1 ATP-dependent zinc metalloprotease FtsH -
  GLO74_RS10805 (GLO74_11010) hpt 2107542..2108084 (-) 543 WP_000892185.1 hypoxanthine phosphoribosyltransferase -
  GLO74_RS10810 (GLO74_11015) tilS 2108088..2109365 (-) 1278 WP_024477995.1 tRNA lysidine(34) synthetase TilS -

Sequence


Protein


Download         Length: 159 a.a.        Molecular weight: 19887.54 Da        Isoelectric Point: 7.3798

>NTDB_id=402991 GLO74_RS10795 WP_000588925.1 2104967..2105446(-) (comX/comX2) [Streptococcus pneumoniae strain 310]
MIKELYEEVQGTVYKCRNEYYLHLWELSDWEQEGMLCLHELISREEGLVDDIPRLRKYFKTKFRNRILDYIRKQESQKRR
YDKEPYEEVGEISHRISEGGLWLDDYYLFHETLRDYRNKQSKEKQEELERVLSNERFRGRQRVLRDLRIVFKEFTIRTH

Nucleotide


Download         Length: 480 bp        

>NTDB_id=402991 GLO74_RS10795 WP_000588925.1 2104967..2105446(-) (comX/comX2) [Streptococcus pneumoniae strain 310]
ATGATTAAAGAATTGTATGAAGAAGTCCAAGGGACTGTGTATAAGTGTAGAAATGAATATTACCTTCATTTATGGGAATT
GTCGGATTGGGAGCAAGAAGGCATGCTCTGCTTACATGAATTGATTAGTAGAGAAGAAGGACTGGTAGACGATATTCCAC
GTTTAAGGAAATATTTCAAGACCAAGTTTCGAAATCGAATTTTAGACTATATCCGTAAACAGGAAAGTCAGAAGCGTAGA
TACGATAAAGAACCCTATGAAGAAGTGGGTGAGATCAGTCATCGTATAAGTGAGGGGGGTCTCTGGCTAGATGATTATTA
TCTCTTTCATGAAACACTAAGAGATTATAGAAACAAACAAAGTAAAGAGAAACAAGAAGAACTAGAACGCGTCTTAAGCA
ATGAACGATTTCGAGGGCGTCAAAGAGTATTAAGAGACTTACGCATTGTGTTTAAGGAGTTTACTATCCGTACCCATTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/comX2 Streptococcus pneumoniae TIGR4

100

100

1

  comX/comX1 Streptococcus pneumoniae TIGR4

100

100

1

  comX/comX2 Streptococcus pneumoniae Rx1

99.371

100

0.994

  comX/comX1 Streptococcus pneumoniae Rx1

99.371

100

0.994

  comX/comX2 Streptococcus pneumoniae D39

99.371

100

0.994

  comX/comX1 Streptococcus pneumoniae D39

99.371

100

0.994

  comX/comX2 Streptococcus pneumoniae R6

99.371

100

0.994

  comX/comX1 Streptococcus pneumoniae R6

99.371

100

0.994

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

91.824

100

0.918

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

91.824

100

0.918

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

89.937

100

0.899

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

88.608

99.371

0.881

  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

48.718

98.113

0.478

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

48.718

98.113

0.478

  comX/sigX Streptococcus suis D9

46.358

94.969

0.44

  comX/sigX Streptococcus suis isolate S10

46.358

94.969

0.44

  comX/sigX Streptococcus suis P1/7

46.358

94.969

0.44

  comX/sigX Streptococcus mutans UA159

46

94.34

0.434

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

39.216

96.226

0.377

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

39.216

96.226

0.377

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40

94.34

0.377

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40

94.34

0.377

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40

94.34

0.377

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40

94.34

0.377

  comX Streptococcus salivarius SK126

38.926

93.711

0.365

  comX Streptococcus thermophilus LMG 18311

38.926

93.711

0.365

  comX Streptococcus thermophilus LMD-9

38.926

93.711

0.365


Multiple sequence alignment