Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NMBH4476_RS10690 Genome accession   NC_017516
Coordinates   2066179..2067147 (+) Length   322 a.a.
NCBI ID   WP_002237364.1    Uniprot ID   -
Organism   Neisseria meningitidis H44/76     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2061179..2072147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS10680 (NMBH4476_1926) fetA 2062365..2064527 (+) 2163 WP_002244334.1 TonB-dependent siderophore receptor FetA/FrpB -
  NMBH4476_RS10685 (NMBH4476_1927) - 2064832..2065797 (+) 966 WP_002244335.1 siderophore ABC transporter substrate-binding protein -
  NMBH4476_RS14825 - 2065815..2065964 (+) 150 WP_162467379.1 hypothetical protein -
  NMBH4476_RS10690 (NMBH4476_1928) ceuB 2066179..2067147 (+) 969 WP_002237364.1 ABC transporter permease Machinery gene
  NMBH4476_RS10695 (NMBH4476_1929) - 2067137..2068111 (+) 975 WP_002237365.1 iron chelate uptake ABC transporter family permease subunit -
  NMBH4476_RS10700 (NMBH4476_1930) - 2068156..2068782 (+) 627 WP_002237366.1 FmdE family protein -
  NMBH4476_RS10705 (NMBH4476_1931) - 2068866..2069624 (+) 759 WP_002237367.1 ABC transporter ATP-binding protein -
  NMBH4476_RS10710 (NMBH4476_1932) - 2069683..2070021 (-) 339 WP_002237368.1 P-II family nitrogen regulator -
  NMBH4476_RS13390 - 2070116..2070328 (+) 213 WP_009345563.1 hypothetical protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34369.67 Da        Isoelectric Point: 10.0380

>NTDB_id=38997 NMBH4476_RS10690 WP_002237364.1 2066179..2067147(+) (ceuB) [Neisseria meningitidis H44/76]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSGVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLMGDKLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=38997 NMBH4476_RS10690 WP_002237364.1 2066179..2067147(+) (ceuB) [Neisseria meningitidis H44/76]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCGGACAGCCAGCAGGTTATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTTTGATGCGTAACCGTTTTGTC
GAGCCTTCTATGGCGGGCGCGGGTCAAAGCGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGCTGGTGTTTATGCTGCTGATCCGCCGTCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCAGTGGCGACGTTTATCGCGTAT
GAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCAGGCGTACTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTGGCTTTGATTACGTCGCTGGTTATC
GTTACGGTCGGCAATATCCCGTTTATCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATGGGCGACAAGCTGCGACA
AAGCCTGCCTGCGGTGGCCTTGCTGGGCGCATCTTTGGTGTTGCTGTGCGATATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTGTTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388

Multiple sequence alignment