Detailed information NTG0383568

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: FY406_RS04150
• Genome accession: NZ_CP043405
• Coordinates: 851387..851701 (+)
• Length: 104 a.a.
• NCBI ID: WP_003086839.1
• Uniprot ID: -
• Organism: Streptococcus ratti strain ATCC 31377
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 846387..856701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY406_RS04125 (FY406_04125)	-	846670..847278 (+)	609	WP_003086844.1	PepSY domain-containing protein	-
FY406_RS04130 (FY406_04130)	-	847422..848114 (+)	693	WP_003086843.1	response regulator transcription factor	-
FY406_RS04135 (FY406_04135)	-	848077..849426 (+)	1350	WP_003086842.1	cell wall metabolism sensor histidine kinase WalK	-
FY406_RS04140 (FY406_04140)	comYA	849479..850420 (+)	942	WP_003086841.1	competence type IV pilus ATPase ComGA	Machinery gene
FY406_RS04145 (FY406_04145)	comYB	850344..851387 (+)	1044	WP_404827213.1	competence type IV pilus assembly protein ComGB	Machinery gene
FY406_RS04150 (FY406_04150)	comYC	851387..851701 (+)	315	WP_003086839.1	competence type IV pilus major pilin ComGC	Machinery gene
FY406_RS04155 (FY406_04155)	comYD	851688..852095 (+)	408	WP_003086838.1	competence type IV pilus minor pilin ComGD	Machinery gene
FY406_RS04160 (FY406_04160)	comYE	852067..852360 (+)	294	WP_003086837.1	competence type IV pilus minor pilin ComGE	Machinery gene
FY406_RS04165 (FY406_04165)	comYF	852347..852781 (+)	435	WP_003086836.1	competence type IV pilus minor pilin ComGF	Machinery gene
FY406_RS04170 (FY406_04170)	comYG	852759..853166 (+)	408	WP_003091335.1	competence type IV pilus minor pilin ComGG	Machinery gene
FY406_RS04175 (FY406_04175)	comYH	853215..854168 (+)	954	WP_003086833.1	class I SAM-dependent methyltransferase	Machinery gene
FY406_RS04180 (FY406_04180)	-	854228..855427 (+)	1200	WP_003086832.1	acetate kinase	-
FY406_RS04185 (FY406_04185)	-	855630..856307 (+)	678	WP_003086831.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 104 a.a.
• Molecular weight: 11546.60 Da
• Isoelectric Point: 10.1684

>NTDB_id=383568 FY406_RS04150 WP_003086839.1 851387..851701(+) (comYC) [Streptococcus ratti strain ATCC 31377]
MKKLKKVTVKGFTLIEMLVVLLIISVLLLLFVPNLTKQKDKVKDTGNSAVVKVVESQAELYELDKTDSATLSKLVASGNI
TQEQANSYKAYYAKHPEKARHVAN

Nucleotide

• Length: 315 bp

>NTDB_id=383568 FY406_RS04150 WP_003086839.1 851387..851701(+) (comYC) [Streptococcus ratti strain ATCC 31377]
ATGAAAAAATTAAAGAAAGTTACCGTTAAAGGGTTCACATTGATTGAAATGCTAGTCGTTTTGCTAATCATCAGTGTTTT
GCTGCTTTTGTTTGTACCTAATTTAACAAAGCAAAAAGATAAGGTAAAGGATACAGGCAATTCGGCTGTTGTCAAAGTTG
TCGAAAGTCAGGCTGAACTGTATGAATTGGATAAGACTGACTCGGCAACCCTTTCAAAATTAGTAGCTAGCGGTAATATT
ACTCAGGAACAGGCAAATTCTTATAAGGCTTATTATGCAAAACATCCTGAAAAGGCACGCCATGTGGCGAATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (10-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus mutans UA140	88.462	100	0.885
comYC	Streptococcus mutans UA159	88.462	100	0.885
comYC	Streptococcus gordonii str. Challis substr. CH1	75.238	100	0.76
comGC/cglC	Streptococcus mitis SK321	70.707	95.192	0.673
comGC/cglC	Streptococcus mitis NCTC 12261	73.913	88.462	0.654
comGC/cglC	Streptococcus pneumoniae R6	65.686	98.077	0.644
comGC/cglC	Streptococcus pneumoniae D39	65.686	98.077	0.644
comGC/cglC	Streptococcus pneumoniae Rx1	65.686	98.077	0.644
comGC/cglC	Streptococcus pneumoniae TIGR4	66.667	95.192	0.635
comGC	Lactococcus lactis subsp. cremoris KW2	55.446	97.115	0.538
comYC	Streptococcus suis isolate S10	63.636	84.615	0.538
comGC	Staphylococcus aureus MW2	47.059	81.731	0.385
comGC	Staphylococcus aureus N315	47.059	81.731	0.385