Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   FY406_RS04170 Genome accession   NZ_CP043405
Coordinates   852759..853166 (+) Length   135 a.a.
NCBI ID   WP_003091335.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 847759..858166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS04135 (FY406_04135) - 848077..849426 (+) 1350 WP_003086842.1 cell wall metabolism sensor histidine kinase WalK -
  FY406_RS04140 (FY406_04140) comYA 849479..850420 (+) 942 WP_003086841.1 competence type IV pilus ATPase ComGA Machinery gene
  FY406_RS04145 (FY406_04145) comYB 850344..851387 (+) 1044 WP_404827213.1 competence type IV pilus assembly protein ComGB Machinery gene
  FY406_RS04150 (FY406_04150) comYC 851387..851701 (+) 315 WP_003086839.1 competence type IV pilus major pilin ComGC Machinery gene
  FY406_RS04155 (FY406_04155) comYD 851688..852095 (+) 408 WP_003086838.1 competence type IV pilus minor pilin ComGD Machinery gene
  FY406_RS04160 (FY406_04160) comYE 852067..852360 (+) 294 WP_003086837.1 competence type IV pilus minor pilin ComGE Machinery gene
  FY406_RS04165 (FY406_04165) comYF 852347..852781 (+) 435 WP_003086836.1 competence type IV pilus minor pilin ComGF Machinery gene
  FY406_RS04170 (FY406_04170) comYG 852759..853166 (+) 408 WP_003091335.1 competence type IV pilus minor pilin ComGG Machinery gene
  FY406_RS04175 (FY406_04175) comYH 853215..854168 (+) 954 WP_003086833.1 class I SAM-dependent methyltransferase Machinery gene
  FY406_RS04180 (FY406_04180) - 854228..855427 (+) 1200 WP_003086832.1 acetate kinase -
  FY406_RS04185 (FY406_04185) - 855630..856307 (+) 678 WP_003086831.1 CPBP family intramembrane glutamic endopeptidase -
  FY406_RS04190 (FY406_04190) proC 856423..857193 (-) 771 WP_003086830.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15778.24 Da        Isoelectric Point: 10.3756

>NTDB_id=383572 FY406_RS04170 WP_003091335.1 852759..853166(+) (comYG) [Streptococcus ratti strain ATCC 31377]
MHLMKKVKAGVLLYALLMAAIFSLLLQFYLNRVLVTQRQNQLQLSASQAYLIAELTQDLAKENSGQFTFNYGSSIYQKEN
QKILIEVHLKSGQSYRYHFKKESAKTKEKLAERKLEKEKTPPEESREKRRSQTHN

Nucleotide


Download         Length: 408 bp        

>NTDB_id=383572 FY406_RS04170 WP_003091335.1 852759..853166(+) (comYG) [Streptococcus ratti strain ATCC 31377]
ATGCATTTGATGAAAAAAGTTAAGGCAGGTGTTCTTTTATATGCCTTGTTAATGGCAGCAATATTTAGCCTTTTATTGCA
GTTTTATCTTAACCGTGTTCTTGTGACGCAAAGGCAGAATCAGTTACAATTATCAGCCAGTCAGGCTTACCTTATAGCAG
AATTGACTCAGGATTTAGCCAAAGAGAACAGTGGGCAGTTTACTTTTAATTATGGCAGTTCAATTTATCAGAAGGAGAAT
CAGAAGATTCTGATTGAAGTACATTTGAAAAGCGGTCAGTCTTACCGCTATCACTTTAAAAAAGAGAGTGCTAAGACAAA
GGAAAAGTTGGCTGAAAGGAAGCTTGAAAAAGAGAAAACACCCCCTGAAGAATCAAGGGAAAAGAGACGTTCTCAAACAC
ATAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

70.707

73.333

0.519
  comYG Streptococcus mutans UA159

70.707

73.333

0.519

Multiple sequence alignment