Detailed information NTG0383569

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: FY406_RS04155
• Genome accession: NZ_CP043405
• Coordinates: 851688..852095 (+)
• Length: 135 a.a.
• NCBI ID: WP_003086838.1
• Uniprot ID: -
• Organism: Streptococcus ratti strain ATCC 31377
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 846688..857095

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY406_RS04130 (FY406_04130)	-	847422..848114 (+)	693	WP_003086843.1	response regulator transcription factor	-
FY406_RS04135 (FY406_04135)	-	848077..849426 (+)	1350	WP_003086842.1	cell wall metabolism sensor histidine kinase WalK	-
FY406_RS04140 (FY406_04140)	comYA	849479..850420 (+)	942	WP_003086841.1	competence type IV pilus ATPase ComGA	Machinery gene
FY406_RS04145 (FY406_04145)	comYB	850344..851387 (+)	1044	WP_404827213.1	competence type IV pilus assembly protein ComGB	Machinery gene
FY406_RS04150 (FY406_04150)	comYC	851387..851701 (+)	315	WP_003086839.1	competence type IV pilus major pilin ComGC	Machinery gene
FY406_RS04155 (FY406_04155)	comYD	851688..852095 (+)	408	WP_003086838.1	competence type IV pilus minor pilin ComGD	Machinery gene
FY406_RS04160 (FY406_04160)	comYE	852067..852360 (+)	294	WP_003086837.1	competence type IV pilus minor pilin ComGE	Machinery gene
FY406_RS04165 (FY406_04165)	comYF	852347..852781 (+)	435	WP_003086836.1	competence type IV pilus minor pilin ComGF	Machinery gene
FY406_RS04170 (FY406_04170)	comYG	852759..853166 (+)	408	WP_003091335.1	competence type IV pilus minor pilin ComGG	Machinery gene
FY406_RS04175 (FY406_04175)	comYH	853215..854168 (+)	954	WP_003086833.1	class I SAM-dependent methyltransferase	Machinery gene
FY406_RS04180 (FY406_04180)	-	854228..855427 (+)	1200	WP_003086832.1	acetate kinase	-
FY406_RS04185 (FY406_04185)	-	855630..856307 (+)	678	WP_003086831.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 135 a.a.
• Molecular weight: 15199.55 Da
• Isoelectric Point: 8.4323

>NTDB_id=383569 FY406_RS04155 WP_003086838.1 851688..852095(+) (comYD) [Streptococcus ratti strain ATCC 31377]
MWRIKVKAFTLLESLITLAITAFLILSLSGGIEQTFASVEEQLFFLSFEHLYRDTQKFSALSKQEMTLTLDKGKISNGLE
TLDVPEHIKLGKDMTLHFDQAGGNSSLAKLSFQTPKKTVTYQLYIGSGQYKKTEN

Nucleotide

• Length: 408 bp

>NTDB_id=383569 FY406_RS04155 WP_003086838.1 851688..852095(+) (comYD) [Streptococcus ratti strain ATCC 31377]
ATGTGGCGAATTAAAGTTAAAGCTTTTACTCTTTTGGAGAGCCTAATAACTCTAGCCATTACAGCTTTTTTAATTCTGAG
TCTGTCTGGGGGAATTGAGCAGACCTTTGCCAGTGTAGAAGAGCAGCTCTTTTTTCTGTCATTTGAGCATCTTTATCGTG
ACACACAGAAGTTCAGTGCTCTATCTAAACAGGAAATGACTCTGACTTTAGATAAAGGAAAAATTTCTAATGGCCTTGAG
ACGCTTGATGTTCCTGAGCATATTAAATTAGGAAAAGACATGACGCTGCATTTTGATCAAGCAGGCGGGAACTCGTCGCT
AGCTAAACTTAGTTTCCAGACTCCAAAAAAGACAGTAACTTATCAATTATACATAGGGAGTGGTCAATATAAAAAGACAG
AAAATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-28)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA159	70.455	97.778	0.689
comYD	Streptococcus mutans UA140	70.455	97.778	0.689
comGD/cglD	Streptococcus mitis SK321	52.756	94.074	0.496
comGD/cglD	Streptococcus mitis NCTC 12261	51.938	95.556	0.496
comGD/cglD	Streptococcus pneumoniae D39	51.969	94.074	0.489
comGD/cglD	Streptococcus pneumoniae Rx1	51.969	94.074	0.489
comGD/cglD	Streptococcus pneumoniae R6	51.969	94.074	0.489
comGD/cglD	Streptococcus pneumoniae TIGR4	51.181	94.074	0.481
comYD	Streptococcus gordonii str. Challis substr. CH1	45.185	100	0.452
comGD	Lactococcus lactis subsp. cremoris KW2	38.194	100	0.407