Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HGI45_RS04955 | Genome accession | NZ_CP051292 |
| Coordinates | 1078596..1079831 (+) | Length | 411 a.a. |
| NCBI ID | WP_202136787.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ASHA-003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1073596..1084831
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI45_RS04940 (HGI45_04935) | - | 1074279..1076210 (+) | 1932 | WP_202136786.1 | type IA DNA topoisomerase | - |
| HGI45_RS04945 (HGI45_04940) | - | 1076340..1077326 (+) | 987 | Protein_982 | virB8 family protein | - |
| HGI45_RS04950 (HGI45_04945) | - | 1077326..1078599 (+) | 1274 | Protein_983 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HGI45_RS04955 (HGI45_04950) | comB10 | 1078596..1079831 (+) | 1236 | WP_202136787.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HGI45_RS04960 (HGI45_04955) | - | 1079901..1080197 (+) | 297 | WP_202136788.1 | hypothetical protein | - |
| HGI45_RS04965 (HGI45_04960) | - | 1080187..1080450 (+) | 264 | WP_120821027.1 | hypothetical protein | - |
| HGI45_RS04970 (HGI45_04965) | - | 1080447..1080746 (+) | 300 | WP_000660142.1 | hypothetical protein | - |
| HGI45_RS04975 (HGI45_04970) | - | 1080746..1081687 (+) | 942 | WP_202136789.1 | ATPase, T2SS/T4P/T4SS family | - |
| HGI45_RS04980 (HGI45_04975) | - | 1081684..1082139 (+) | 456 | WP_202136790.1 | mobilization protein | - |
| HGI45_RS04985 (HGI45_04980) | - | 1082136..1082426 (+) | 291 | WP_000159813.1 | hypothetical protein | - |
| HGI45_RS04990 (HGI45_04985) | - | 1082427..1082984 (+) | 558 | WP_187859224.1 | hypothetical protein | - |
| HGI45_RS04995 (HGI45_04990) | - | 1082985..1084733 (+) | 1749 | WP_202136791.1 | type IV secretory system conjugative DNA transfer family protein | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 46516.69 Da Isoelectric Point: 10.1056
>NTDB_id=383567 HGI45_RS04955 WP_202136787.1 1078596..1079831(+) (comB10) [Helicobacter pylori strain ASHA-003]
MKKLLLLLEHKIVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINQVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTADEDEKTRLVILASRISSQKETQPPISIKNSVSHIKSK
EKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNNTK
MKKLLLLLEHKIVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINQVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTADEDEKTRLVILASRISSQKETQPPISIKNSVSHIKSK
EKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNNTK
Nucleotide
Download Length: 1236 bp
>NTDB_id=383567 HGI45_RS04955 WP_202136787.1 1078596..1079831(+) (comB10) [Helicobacter pylori strain ASHA-003]
ATGAAAAAACTTCTTTTACTCTTGGAGCATAAGATTGTAAAAATTGGATTAATTATTGTGATTGTGTTAGTGGGTTTTTT
TCTTTTTTATGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGCAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACCATCAATCAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGACTTTAA
TAAAACACTCATCAAACCACAAAGTCCATCTTTCAACTACAATACCGCTGACGAAGATGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAGCCTCCCATTTCTATAAAAAATAGCGTTTCTCACATAAAATCCAAA
GAAAAACGAGAGCTTGAAAAAGAATACGGCTCTAGTGGGTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTAAGAACCATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTCAATATTATTTTAAGCGATGCTAAGGGAGCTGATGTTAAGGGCTATAACGGCATGATAGGCACGCTCCATAACAAAT
ATTGGGAACGCTATGGTATCCCCTTATCCTTAAGCACTTTGTCAAACGGGCTACTCATAGGACTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGAGGCGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGACAAAC
TGGTATCAGCCTGAATAACATTATCGCTCAAATCATGCGAGAGCAAATAAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATAATACAAAATAG
ATGAAAAAACTTCTTTTACTCTTGGAGCATAAGATTGTAAAAATTGGATTAATTATTGTGATTGTGTTAGTGGGTTTTTT
TCTTTTTTATGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGCAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACCATCAATCAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGACTTTAA
TAAAACACTCATCAAACCACAAAGTCCATCTTTCAACTACAATACCGCTGACGAAGATGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAGCCTCCCATTTCTATAAAAAATAGCGTTTCTCACATAAAATCCAAA
GAAAAACGAGAGCTTGAAAAAGAATACGGCTCTAGTGGGTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTAAGAACCATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTCAATATTATTTTAAGCGATGCTAAGGGAGCTGATGTTAAGGGCTATAACGGCATGATAGGCACGCTCCATAACAAAT
ATTGGGAACGCTATGGTATCCCCTTATCCTTAAGCACTTTGTCAAACGGGCTACTCATAGGACTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGAGGCGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGACAAAC
TGGTATCAGCCTGAATAACATTATCGCTCAAATCATGCGAGAGCAAATAAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATAATACAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
45.477 |
96.837 |
0.44 |