Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | FY406_RS04175 | Genome accession | NZ_CP043405 |
| Coordinates | 853215..854168 (+) | Length | 317 a.a. |
| NCBI ID | WP_003086833.1 | Uniprot ID | - |
| Organism | Streptococcus ratti strain ATCC 31377 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 848215..859168
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FY406_RS04140 (FY406_04140) | comYA | 849479..850420 (+) | 942 | WP_003086841.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FY406_RS04145 (FY406_04145) | comYB | 850344..851387 (+) | 1044 | WP_404827213.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| FY406_RS04150 (FY406_04150) | comYC | 851387..851701 (+) | 315 | WP_003086839.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FY406_RS04155 (FY406_04155) | comYD | 851688..852095 (+) | 408 | WP_003086838.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| FY406_RS04160 (FY406_04160) | comYE | 852067..852360 (+) | 294 | WP_003086837.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| FY406_RS04165 (FY406_04165) | comYF | 852347..852781 (+) | 435 | WP_003086836.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| FY406_RS04170 (FY406_04170) | comYG | 852759..853166 (+) | 408 | WP_003091335.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| FY406_RS04175 (FY406_04175) | comYH | 853215..854168 (+) | 954 | WP_003086833.1 | class I SAM-dependent methyltransferase | Machinery gene |
| FY406_RS04180 (FY406_04180) | - | 854228..855427 (+) | 1200 | WP_003086832.1 | acetate kinase | - |
| FY406_RS04185 (FY406_04185) | - | 855630..856307 (+) | 678 | WP_003086831.1 | CPBP family intramembrane glutamic endopeptidase | - |
| FY406_RS04190 (FY406_04190) | proC | 856423..857193 (-) | 771 | WP_003086830.1 | pyrroline-5-carboxylate reductase | - |
| FY406_RS04195 (FY406_04195) | pepA | 857285..858352 (-) | 1068 | WP_003086829.1 | glutamyl aminopeptidase | - |
| FY406_RS04200 (FY406_04200) | - | 858471..858758 (+) | 288 | WP_003086826.1 | DUF4651 domain-containing protein | - |
| FY406_RS04205 (FY406_04205) | - | 858755..859084 (+) | 330 | WP_003086824.1 | thioredoxin family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36237.15 Da Isoelectric Point: 4.3581
>NTDB_id=383573 FY406_RS04175 WP_003086833.1 853215..854168(+) (comYH) [Streptococcus ratti strain ATCC 31377]
MDFEKIETAYNLLLDNCQQLEAKIQTNLYDALIEQNAYYLGADGADDMIRQNNYQLRQLNLSKEEWRRTFQFLFIKAAQD
SQLQANHQFTPDSIGFILLYLLEELTDSDQLDVLEIGSGTGNLAETLVNNSSKELDYMGIEVDDLLIDLSASVADVLDSP
VHFIQEDAVRPQILKESDVIISDLPVGFYPNNDIAKRYEVAAAEGHTYAHHLLMEQSFKYLKKNGLAIFLAPVDLLTSEQ
SPLLKAWLQEKAAVLSVISLPEKVFSHKNNMKSIFILKKQETQDCETFVYPLTDLQNPDILRSFMKNFKKWKEDNVI
MDFEKIETAYNLLLDNCQQLEAKIQTNLYDALIEQNAYYLGADGADDMIRQNNYQLRQLNLSKEEWRRTFQFLFIKAAQD
SQLQANHQFTPDSIGFILLYLLEELTDSDQLDVLEIGSGTGNLAETLVNNSSKELDYMGIEVDDLLIDLSASVADVLDSP
VHFIQEDAVRPQILKESDVIISDLPVGFYPNNDIAKRYEVAAAEGHTYAHHLLMEQSFKYLKKNGLAIFLAPVDLLTSEQ
SPLLKAWLQEKAAVLSVISLPEKVFSHKNNMKSIFILKKQETQDCETFVYPLTDLQNPDILRSFMKNFKKWKEDNVI
Nucleotide
Download Length: 954 bp
>NTDB_id=383573 FY406_RS04175 WP_003086833.1 853215..854168(+) (comYH) [Streptococcus ratti strain ATCC 31377]
ATGGATTTTGAAAAAATAGAAACAGCCTACAATTTACTATTAGATAATTGTCAGCAACTGGAAGCGAAAATTCAGACAAA
TCTTTACGATGCTTTAATTGAGCAAAATGCTTATTATCTGGGAGCCGACGGAGCCGATGACATGATTAGACAGAACAATT
ATCAGTTACGGCAGCTGAATCTCAGTAAAGAAGAGTGGCGCAGAACCTTTCAATTTCTGTTTATTAAGGCAGCTCAAGAC
TCTCAGCTGCAAGCAAACCATCAGTTTACTCCAGACAGTATCGGCTTTATACTTCTTTATTTACTGGAAGAATTGACTGA
CAGTGATCAGTTAGATGTTCTTGAAATTGGTTCAGGAACAGGAAATCTCGCTGAAACGCTGGTTAATAATAGTTCGAAAG
AGCTAGACTATATGGGTATTGAGGTGGATGACCTTTTGATTGATTTATCCGCAAGTGTTGCAGATGTCTTAGATTCTCCT
GTTCATTTTATTCAAGAAGATGCTGTGCGGCCGCAAATTTTAAAGGAAAGTGATGTTATTATCAGTGATCTGCCTGTTGG
TTTTTATCCTAACAATGACATTGCTAAACGCTACGAAGTTGCAGCGGCAGAAGGTCACACCTATGCTCACCATCTTTTAA
TGGAGCAGTCGTTTAAGTATTTAAAGAAAAATGGACTGGCTATTTTTCTAGCACCTGTCGACTTGCTGACCAGCGAACAG
AGCCCTTTATTAAAGGCGTGGTTGCAGGAAAAAGCTGCTGTTTTATCGGTTATCTCTTTACCGGAGAAAGTTTTTAGTCA
TAAAAATAATATGAAATCTATTTTTATCTTAAAGAAGCAGGAAACACAAGATTGCGAGACCTTTGTTTACCCGCTGACGG
ATTTACAGAATCCTGATATTTTACGAAGTTTCATGAAAAATTTTAAAAAATGGAAGGAAGATAATGTCATTTAA
ATGGATTTTGAAAAAATAGAAACAGCCTACAATTTACTATTAGATAATTGTCAGCAACTGGAAGCGAAAATTCAGACAAA
TCTTTACGATGCTTTAATTGAGCAAAATGCTTATTATCTGGGAGCCGACGGAGCCGATGACATGATTAGACAGAACAATT
ATCAGTTACGGCAGCTGAATCTCAGTAAAGAAGAGTGGCGCAGAACCTTTCAATTTCTGTTTATTAAGGCAGCTCAAGAC
TCTCAGCTGCAAGCAAACCATCAGTTTACTCCAGACAGTATCGGCTTTATACTTCTTTATTTACTGGAAGAATTGACTGA
CAGTGATCAGTTAGATGTTCTTGAAATTGGTTCAGGAACAGGAAATCTCGCTGAAACGCTGGTTAATAATAGTTCGAAAG
AGCTAGACTATATGGGTATTGAGGTGGATGACCTTTTGATTGATTTATCCGCAAGTGTTGCAGATGTCTTAGATTCTCCT
GTTCATTTTATTCAAGAAGATGCTGTGCGGCCGCAAATTTTAAAGGAAAGTGATGTTATTATCAGTGATCTGCCTGTTGG
TTTTTATCCTAACAATGACATTGCTAAACGCTACGAAGTTGCAGCGGCAGAAGGTCACACCTATGCTCACCATCTTTTAA
TGGAGCAGTCGTTTAAGTATTTAAAGAAAAATGGACTGGCTATTTTTCTAGCACCTGTCGACTTGCTGACCAGCGAACAG
AGCCCTTTATTAAAGGCGTGGTTGCAGGAAAAAGCTGCTGTTTTATCGGTTATCTCTTTACCGGAGAAAGTTTTTAGTCA
TAAAAATAATATGAAATCTATTTTTATCTTAAAGAAGCAGGAAACACAAGATTGCGAGACCTTTGTTTACCCGCTGACGG
ATTTACAGAATCCTGATATTTTACGAAGTTTCATGAAAAATTTTAAAAAATGGAAGGAAGATAATGTCATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
79.43 |
99.685 |
0.792 |
| comYH | Streptococcus mutans UA140 |
79.43 |
99.685 |
0.792 |