Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   FYK18_RS16375 Genome accession   NZ_CP043266
Coordinates   3232064..3233044 (-) Length   326 a.a.
NCBI ID   WP_072248905.1    Uniprot ID   -
Organism   Escherichia albertii strain RM9974     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3227064..3238044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK18_RS16345 (FYK18_16570) - 3227719..3228216 (+) 498 WP_002461299.1 SprT family zinc-dependent metalloprotease -
  FYK18_RS16350 (FYK18_16575) endA 3228311..3229018 (+) 708 WP_002461298.1 deoxyribonuclease I -
  FYK18_RS16355 (FYK18_16580) rsmE 3229098..3229829 (+) 732 WP_002461297.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  FYK18_RS16360 (FYK18_16585) gshB 3229842..3230792 (+) 951 WP_149535030.1 glutathione synthase -
  FYK18_RS16365 (FYK18_16590) - 3230901..3231464 (+) 564 WP_002461296.1 YqgE/AlgH family protein -
  FYK18_RS16370 (FYK18_16595) ruvX 3231464..3231898 (+) 435 WP_059220283.1 Holliday junction resolvase RuvX -
  FYK18_RS16375 (FYK18_16600) pilT 3232064..3233044 (-) 981 WP_072248905.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  FYK18_RS16380 (FYK18_16605) yggS 3233062..3233766 (+) 705 WP_059220282.1 pyridoxal phosphate homeostasis protein -
  FYK18_RS16385 (FYK18_16610) yggT 3233784..3234350 (+) 567 WP_001094839.1 osmotic shock tolerance protein YggT -
  FYK18_RS16390 (FYK18_16615) yggU 3234347..3234637 (+) 291 WP_059220281.1 DUF167 family protein YggU -
  FYK18_RS16395 (FYK18_16620) - 3234645..3235238 (+) 594 WP_001174776.1 XTP/dITP diphosphatase -
  FYK18_RS16400 (FYK18_16625) hemW 3235231..3236367 (+) 1137 WP_059220280.1 radical SAM family heme chaperone HemW -
  FYK18_RS16405 (FYK18_16630) - 3236432..3237439 (-) 1008 WP_265450692.1 DUF1202 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36047.17 Da        Isoelectric Point: 5.5860

>NTDB_id=382582 FYK18_RS16375 WP_072248905.1 3232064..3233044(-) (pilT) [Escherichia albertii strain RM9974]
MNMEEIVALSVKHNVSDLHLCSVWPARWRIRGRMEAAPFDTPDVEELLREWLDDDQRALLLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPTVLPELLNNENGLILVTGATGSGKSTTLAAMVGYLNQHTDAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=382582 FYK18_RS16375 WP_072248905.1 3232064..3233044(-) (pilT) [Escherichia albertii strain RM9974]
ATGAATATGGAAGAAATTGTGGCTCTTAGTGTAAAGCATAATGTCTCGGATCTACACCTGTGTAGCGTCTGGCCTGCACG
CTGGCGTATTCGCGGGAGGATGGAAGCTGCGCCGTTTGATACGCCGGACGTTGAAGAGCTGCTAAGGGAATGGCTGGATG
ACGATCAGCGAGCGTTATTGCTGGAGAATGGGCAGTTGGATTTTGCCGTGTCGTTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCGCAACGGCAAGGCATTTCGCTGGCGTTACGGTTGTTGCCTTCGCATTGCCCGCAACTCGAACAGCTTGG
TGCGCCGACGGTATTACCGGAACTACTCAATAACGAGAATGGACTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CCACCACACTGGCGGCGATGGTTGGTTATCTCAATCAGCATACCGATGCGCATATTCTTACGCTGGAAGATCCTGTGGAA
TATCTTTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACGTTTGCATCGGGATTACG
TGCGGCATTGCGGGAAGATCCCGATGTAATTTTGCTTGGCGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGTTGACGG
CGGCAGAAACAGGTCATCTGGTGCTGGCAACCTTGCATACGCGCGGAGCGGCTCAGGCGGTCGAGCGGCTGGTGGATTCG
TTTCCGGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCCGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTGCTGATTAACACACCTGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTGCCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGTTAACTTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.847

100

0.5
  pilT Vibrio cholerae strain A1552

49.847

100

0.5
  pilT Neisseria meningitidis 8013

47.866

100

0.482
  pilT Neisseria gonorrhoeae MS11

47.561

100

0.479
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.954

100

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.824

97.546

0.408
  pilU Vibrio cholerae strain A1552

40.694

97.239

0.396
  pilU Pseudomonas stutzeri DSM 10701

38.554

100

0.393

Multiple sequence alignment