Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | BMF77_RS19400 | Genome accession | NZ_CP043056 |
| Coordinates | 4042817..4043917 (+) | Length | 366 a.a. |
| NCBI ID | WP_148765085.1 | Uniprot ID | - |
| Organism | Dolichospermum sp. UHCC 0315A | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4037817..4048917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BMF77_RS29065 | - | 4039165..4039332 (+) | 168 | WP_371735126.1 | hypothetical protein | - |
| BMF77_RS19390 (BMF77_03776) | grpE | 4039504..4040178 (-) | 675 | WP_148765081.1 | nucleotide exchange factor GrpE | - |
| BMF77_RS19395 (BMF77_03777) | pilB/pilB1 | 4040752..4042752 (+) | 2001 | WP_148765083.1 | GspE/PulE family protein | Machinery gene |
| BMF77_RS19400 (BMF77_03778) | pilT | 4042817..4043917 (+) | 1101 | WP_148765085.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| BMF77_RS26875 | - | 4043909..4044058 (-) | 150 | WP_168204467.1 | hypothetical protein | - |
| BMF77_RS19405 (BMF77_03779) | - | 4044090..4045313 (+) | 1224 | WP_148765087.1 | type II secretion system F family protein | - |
| BMF77_RS19410 (BMF77_03780) | - | 4045507..4047399 (+) | 1893 | WP_148765089.1 | GTPase family protein | - |
| BMF77_RS19415 (BMF77_03781) | - | 4047641..4048495 (+) | 855 | WP_148765091.1 | bile acid:sodium symporter family protein | - |
Sequence
Protein
Download Length: 366 a.a. Molecular weight: 40161.45 Da Isoelectric Point: 7.3523
>NTDB_id=380414 BMF77_RS19400 WP_148765085.1 4042817..4043917(+) (pilT) [Dolichospermum sp. UHCC 0315A]
MEMMIEDLMEELITRGGSDLHLSAGLPPYFRISGRLTPIGENILTADECQRLIFSMLNNTQRKTLEQTWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEKLGLPDIVREMTEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILTV
EDPVEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIILVGEMRDLETIALAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPSEKQTQVRVQLSNSLVAVFSQTLVPKKNVKSGEYGRVMAQEIMIITPAISNLIREGKTAQIYSAIQTGGKLGM
QTLEKVLADLYKAGTISFEAAISKTSKPDEVQRLIGATAPAGAKLR
MEMMIEDLMEELITRGGSDLHLSAGLPPYFRISGRLTPIGENILTADECQRLIFSMLNNTQRKTLEQTWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEKLGLPDIVREMTEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILTV
EDPVEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIILVGEMRDLETIALAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPSEKQTQVRVQLSNSLVAVFSQTLVPKKNVKSGEYGRVMAQEIMIITPAISNLIREGKTAQIYSAIQTGGKLGM
QTLEKVLADLYKAGTISFEAAISKTSKPDEVQRLIGATAPAGAKLR
Nucleotide
Download Length: 1101 bp
>NTDB_id=380414 BMF77_RS19400 WP_148765085.1 4042817..4043917(+) (pilT) [Dolichospermum sp. UHCC 0315A]
ATGGAAATGATGATTGAAGACTTGATGGAAGAACTAATTACTAGAGGTGGGTCAGACTTGCACCTATCCGCTGGATTGCC
TCCCTATTTTCGGATTAGTGGACGTCTGACACCTATTGGTGAAAACATATTGACGGCTGATGAATGTCAAAGGCTAATTT
TCAGTATGCTCAATAACACTCAGCGCAAAACTTTAGAGCAAACATGGGAATTAGATTGTTCTTACGGTGTCAAGGGATTA
GCTAGGTTCCGGGTGAATGTCTATAAAGAACGTGGTGCTTATGCTGCTTGTTTACGAGCATTAAGTTCTAAAATTCCTAA
CTTTGAAAAATTAGGTTTGCCAGATATAGTCCGGGAAATGACGGAAAAACCTAGAGGACTAATTCTCGTCACAGGTCCAA
CTGGTTCTGGTAAGACTACTACCCTAGCGGCAATGATTGACTTAATTAACCGCACTAGGGCAGAACATATTTTAACAGTT
GAAGACCCTGTGGAATTTGTTTATGAACCAATCAAAAGTCTAGTTCACCAACGCCAATTAGGAGAAGATACGAAGAGTTT
TGCTAATGCTTTAAAAGCAGCTTTACGAGAAGATCCCGATATTATTCTGGTAGGAGAAATGCGGGACTTGGAAACCATTG
CGTTGGCGATTTCCGCCGCAGAAACAGGTCACTTGGTATTTGGTACACTACATACAAGTTCTGCCGCACAAACCGTTGAC
CGGATTATTGACGTTTTTCCCTCAGAAAAACAAACTCAGGTGCGGGTGCAGTTGTCTAACTCCTTAGTCGCAGTTTTTAG
TCAGACTTTAGTACCTAAGAAAAATGTCAAGTCAGGTGAATATGGGCGAGTAATGGCTCAAGAAATTATGATTATCACTC
CCGCTATTTCTAACTTAATTCGGGAAGGAAAAACAGCACAAATTTACTCAGCTATTCAGACGGGTGGTAAATTGGGAATG
CAAACTCTAGAAAAAGTTTTAGCTGATTTGTACAAAGCTGGAACTATTTCTTTTGAAGCAGCAATATCTAAAACTTCTAA
ACCAGATGAAGTCCAGCGTCTAATTGGTGCAACAGCCCCAGCAGGAGCTAAATTACGTTAA
ATGGAAATGATGATTGAAGACTTGATGGAAGAACTAATTACTAGAGGTGGGTCAGACTTGCACCTATCCGCTGGATTGCC
TCCCTATTTTCGGATTAGTGGACGTCTGACACCTATTGGTGAAAACATATTGACGGCTGATGAATGTCAAAGGCTAATTT
TCAGTATGCTCAATAACACTCAGCGCAAAACTTTAGAGCAAACATGGGAATTAGATTGTTCTTACGGTGTCAAGGGATTA
GCTAGGTTCCGGGTGAATGTCTATAAAGAACGTGGTGCTTATGCTGCTTGTTTACGAGCATTAAGTTCTAAAATTCCTAA
CTTTGAAAAATTAGGTTTGCCAGATATAGTCCGGGAAATGACGGAAAAACCTAGAGGACTAATTCTCGTCACAGGTCCAA
CTGGTTCTGGTAAGACTACTACCCTAGCGGCAATGATTGACTTAATTAACCGCACTAGGGCAGAACATATTTTAACAGTT
GAAGACCCTGTGGAATTTGTTTATGAACCAATCAAAAGTCTAGTTCACCAACGCCAATTAGGAGAAGATACGAAGAGTTT
TGCTAATGCTTTAAAAGCAGCTTTACGAGAAGATCCCGATATTATTCTGGTAGGAGAAATGCGGGACTTGGAAACCATTG
CGTTGGCGATTTCCGCCGCAGAAACAGGTCACTTGGTATTTGGTACACTACATACAAGTTCTGCCGCACAAACCGTTGAC
CGGATTATTGACGTTTTTCCCTCAGAAAAACAAACTCAGGTGCGGGTGCAGTTGTCTAACTCCTTAGTCGCAGTTTTTAG
TCAGACTTTAGTACCTAAGAAAAATGTCAAGTCAGGTGAATATGGGCGAGTAATGGCTCAAGAAATTATGATTATCACTC
CCGCTATTTCTAACTTAATTCGGGAAGGAAAAACAGCACAAATTTACTCAGCTATTCAGACGGGTGGTAAATTGGGAATG
CAAACTCTAGAAAAAGTTTTAGCTGATTTGTACAAAGCTGGAACTATTTCTTTTGAAGCAGCAATATCTAAAACTTCTAA
ACCAGATGAAGTCCAGCGTCTAATTGGTGCAACAGCCCCAGCAGGAGCTAAATTACGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
54.755 |
94.809 |
0.519 |
| pilT | Pseudomonas stutzeri DSM 10701 |
54.467 |
94.809 |
0.516 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.179 |
94.809 |
0.514 |
| pilT | Acinetobacter baylyi ADP1 |
54.179 |
94.809 |
0.514 |
| pilT | Legionella pneumophila strain Lp02 |
54.179 |
94.809 |
0.514 |
| pilT | Acinetobacter baumannii strain A118 |
53.026 |
94.809 |
0.503 |
| pilT | Acinetobacter nosocomialis M2 |
53.026 |
94.809 |
0.503 |
| pilT | Acinetobacter baumannii D1279779 |
53.026 |
94.809 |
0.503 |
| pilT | Neisseria gonorrhoeae MS11 |
51.327 |
92.623 |
0.475 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.585 |
93.443 |
0.473 |
| pilT | Vibrio cholerae strain A1552 |
50.585 |
93.443 |
0.473 |
| pilT | Neisseria meningitidis 8013 |
51.032 |
92.623 |
0.473 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.571 |
95.628 |
0.464 |
| pilU | Acinetobacter baylyi ADP1 |
37.705 |
100 |
0.377 |