Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FLP15_RS01235 Genome accession   NZ_CP041356
Coordinates   252671..252973 (-) Length   100 a.a.
NCBI ID   WP_120772581.1    Uniprot ID   -
Organism   Lactococcus protaetiae strain KACC 19320     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 247671..257973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLP15_RS01200 (FLP15_01200) - 247746..248476 (-) 731 Protein_235 metal ABC transporter ATP-binding protein -
  FLP15_RS01205 (FLP15_01205) - 249047..249889 (-) 843 WP_142765687.1 zinc ABC transporter substrate-binding protein -
  FLP15_RS01210 (FLP15_01210) - 250259..250717 (-) 459 WP_142765688.1 zinc-dependent MarR family transcriptional regulator -
  FLP15_RS01215 (FLP15_01215) comGG 251284..251580 (-) 297 WP_142765689.1 competence type IV pilus minor pilin ComGG Machinery gene
  FLP15_RS01220 (FLP15_01220) comGF 251609..252001 (-) 393 WP_142767397.1 competence type IV pilus minor pilin ComGF Machinery gene
  FLP15_RS01225 (FLP15_01225) comGE 252012..252308 (-) 297 WP_142765690.1 competence type IV pilus minor pilin ComGE Machinery gene
  FLP15_RS01230 (FLP15_01230) comGD 252280..252711 (-) 432 WP_142765691.1 competence type IV pilus minor pilin ComGD Machinery gene
  FLP15_RS01235 (FLP15_01235) comGC 252671..252973 (-) 303 WP_120772581.1 competence type IV pilus major pilin ComGC Machinery gene
  FLP15_RS01240 (FLP15_01240) comGB 252977..253999 (-) 1023 WP_142767398.1 competence type IV pilus assembly protein ComGB Machinery gene
  FLP15_RS01245 (FLP15_01245) comGA 253905..254888 (-) 984 WP_142765692.1 competence type IV pilus ATPase ComGA Machinery gene
  FLP15_RS13680 - 255681..255905 (-) 225 Protein_245 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11328.14 Da        Isoelectric Point: 4.4179

>NTDB_id=371481 FLP15_RS01235 WP_120772581.1 252671..252973(-) (comGC) [Lactococcus protaetiae strain KACC 19320]
MRKDIKAFTLIEMLIVLAIISILILLFVPNLLKEKEQVQKTGEAAVVKVVESQAQLYELDHTETPTLSDLVAADMITKKQ
VESYDDYYAQNKGETRELAD

Nucleotide


Download         Length: 303 bp        

>NTDB_id=371481 FLP15_RS01235 WP_120772581.1 252671..252973(-) (comGC) [Lactococcus protaetiae strain KACC 19320]
ATGAGAAAAGATATTAAAGCGTTTACTTTGATTGAGATGTTGATTGTGCTAGCAATTATTAGTATTTTAATTTTGTTGTT
TGTACCTAATCTGTTAAAAGAAAAAGAGCAAGTCCAAAAGACTGGCGAAGCTGCTGTGGTGAAGGTGGTTGAAAGCCAAG
CACAATTGTATGAACTAGATCACACAGAAACACCGACTTTGTCAGATTTGGTGGCAGCGGACATGATTACTAAAAAGCAA
GTTGAGAGCTATGATGACTATTATGCGCAAAATAAGGGAGAAACACGTGAATTGGCAGATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

77

100

0.77
  comYC Streptococcus gordonii str. Challis substr. CH1

62.887

97

0.61
  comYC Streptococcus mutans UA140

61.616

99

0.61
  comYC Streptococcus mutans UA159

61.616

99

0.61
  comGC/cglC Streptococcus mitis SK321

59.375

96

0.57
  comGC/cglC Streptococcus mitis NCTC 12261

59.783

92

0.55
  comGC/cglC Streptococcus pneumoniae Rx1

55.208

96

0.53
  comGC/cglC Streptococcus pneumoniae D39

55.208

96

0.53
  comGC/cglC Streptococcus pneumoniae TIGR4

55.208

96

0.53
  comGC/cglC Streptococcus pneumoniae R6

55.208

96

0.53
  comYC Streptococcus suis isolate S10

61.25

80

0.49
  comGC Staphylococcus aureus N315

46.835

79

0.37
  comGC Staphylococcus aureus MW2

46.835

79

0.37

Multiple sequence alignment