Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   FFA43_RS03205 Genome accession   NZ_CP040464
Coordinates   598273..599334 (+) Length   353 a.a.
NCBI ID   WP_138297620.1    Uniprot ID   -
Organism   Campylobacter hyointestinalis subsp. hyointestinalis strain S12     
Function   pseudopilus biogenesis (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593273..604334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA43_RS03170 (FFA43_03170) brnQ 593348..594649 (-) 1302 WP_081047288.1 branched-chain amino acid transport system II carrier protein -
  FFA43_RS03175 (FFA43_03175) hisG 594658..595269 (-) 612 WP_034962654.1 ATP phosphoribosyltransferase -
  FFA43_RS03180 (FFA43_03180) - 595257..595889 (-) 633 WP_059427127.1 type III pantothenate kinase -
  FFA43_RS03185 (FFA43_03185) - 595876..596202 (-) 327 WP_034962656.1 hypothetical protein -
  FFA43_RS03190 (FFA43_03190) - 596204..597202 (-) 999 WP_059430634.1 hypothetical protein -
  FFA43_RS03195 (FFA43_03195) - 597207..597767 (-) 561 WP_059430633.1 hypothetical protein -
  FFA43_RS03200 (FFA43_03200) gatC 597975..598262 (+) 288 WP_034962659.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  FFA43_RS03205 (FFA43_03205) pilT 598273..599334 (+) 1062 WP_138297620.1 type IV pilus twitching motility protein PilT Machinery gene
  FFA43_RS03210 (FFA43_03210) - 599334..599906 (+) 573 WP_254678477.1 CvpA family protein -
  FFA43_RS03215 (FFA43_03215) - 599906..600388 (+) 483 WP_059425717.1 Fur family transcriptional regulator -
  FFA43_RS03220 (FFA43_03220) lysS 600392..601897 (+) 1506 WP_230937459.1 lysine--tRNA ligase -
  FFA43_RS03225 (FFA43_03225) - 601899..603143 (+) 1245 WP_059430631.1 serine hydroxymethyltransferase -
  FFA43_RS03230 (FFA43_03230) - 603143..603685 (+) 543 WP_034962664.1 DUF1882 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 39224.96 Da        Isoelectric Point: 6.5030

>NTDB_id=364680 FFA43_RS03205 WP_138297620.1 598273..599334(+) (pilT) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
MNIEKLLKTLVYNKGSDLHLVARSEPQIRVSGVLRPLQCGILDGDDVENLCYTVLTDAQKSDLEENKELDFSIELPGIGR
FRGNCYYTMNGSLAAAFRMIPLEIPSLDDLKAPEIFKDIVRREKGLVLVTGPTGSGKSTTLAAMLNEINLTERKHIITIE
DPIEFVHKNKKSLFSHRNIGTDTKTFASALKYALREDPDIILVGDLRDIEAISIAISAAETGHLVFGTLHTNSAIQTVNR
IVDSFDESEQAQIRNMLSISLHAVISQVLVPLTSGGRIAIHEILINNPAISNLIRENKIHQIYSQLQLNQQNTGMQTQTQ
DMERAFKSGLITKDNALRYSTNKQELIGKIGHL

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=364680 FFA43_RS03205 WP_138297620.1 598273..599334(+) (pilT) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
ATGAATATAGAAAAGCTTCTAAAAACTTTGGTTTATAACAAAGGTAGTGATCTACATCTAGTCGCTAGAAGCGAACCTCA
GATCCGTGTAAGTGGAGTTTTGAGACCTTTACAGTGCGGAATTTTAGATGGAGATGATGTAGAAAATTTATGTTATACGG
TGCTTACGGACGCACAAAAAAGCGATCTAGAGGAAAATAAAGAATTAGACTTTTCTATAGAGTTACCTGGCATAGGTCGT
TTTAGGGGAAATTGCTATTATACTATGAACGGTAGTTTGGCCGCGGCTTTTCGTATGATTCCTTTAGAAATCCCAAGCTT
AGATGATCTAAAAGCTCCTGAGATATTTAAGGATATAGTGAGACGAGAAAAAGGGCTTGTTTTGGTCACAGGACCTACTG
GTAGTGGCAAATCAACTACTTTAGCAGCTATGCTAAATGAGATAAACTTAACTGAGAGAAAGCATATCATTACTATAGAA
GATCCTATAGAATTTGTTCATAAAAATAAAAAATCTCTCTTTTCTCATAGAAATATAGGAACCGATACAAAGACATTTGC
TAGTGCTTTAAAGTACGCTCTTAGGGAAGATCCAGATATTATATTAGTAGGAGATCTGCGCGATATAGAAGCTATATCTA
TCGCGATATCTGCAGCAGAAACAGGGCATTTGGTATTTGGCACTTTGCATACAAACTCAGCCATACAGACTGTAAATAGG
ATAGTAGATAGTTTTGATGAGAGCGAGCAAGCTCAGATAAGAAATATGCTTAGTATATCTTTGCATGCTGTCATATCTCA
AGTGCTAGTTCCATTAACTAGCGGCGGTAGGATCGCCATACATGAGATACTCATCAATAATCCTGCTATATCAAATTTAA
TAAGAGAGAATAAAATACATCAAATTTATTCTCAGTTGCAGCTAAATCAGCAAAATACCGGTATGCAAACGCAAACTCAA
GATATGGAAAGAGCATTTAAATCAGGGCTTATAACAAAAGATAATGCTCTTAGATACTCGACAAATAAACAAGAATTAAT
AGGAAAGATAGGGCATTTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(15-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Neisseria gonorrhoeae MS11

53.026

98.3

0.521
  pilT Neisseria meningitidis 8013

52.738

98.3

0.518
  pilT Vibrio cholerae strain A1552

53.172

93.768

0.499
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

53.172

93.768

0.499
  pilT Legionella pneumophila strain ERS1305867

51.02

97.167

0.496
  pilT Legionella pneumophila strain Lp02

51.02

97.167

0.496
  pilT Acinetobacter nosocomialis M2

51.488

95.184

0.49
  pilT Acinetobacter baumannii D1279779

51.488

95.184

0.49
  pilT Acinetobacter baumannii strain A118

51.488

95.184

0.49
  pilT Acinetobacter baylyi ADP1

51.662

93.768

0.484
  pilT Pseudomonas aeruginosa PAK

50.893

95.184

0.484
  pilT Pseudomonas stutzeri DSM 10701

50.893

95.184

0.484
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.804

98.3

0.431
  pilU Pseudomonas stutzeri DSM 10701

38.983

100

0.391
  pilU Acinetobacter baylyi ADP1

38.218

98.584

0.377

Multiple sequence alignment