Detailed information NTG0358232

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GSU80_RS13015
• Genome accession: NZ_CP047231
• Coordinates: 2678138..2679130 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BL21-AI
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2673138..2684130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSU80_RS12995 (GSU80_12995)	otnK	2673913..2675175 (+)	1263	WP_000590371.1	3-oxo-tetronate kinase	-
GSU80_RS13000 (GSU80_13000)	ygbL	2675172..2675810 (+)	639	WP_001278994.1	aldolase	-
GSU80_RS13005 (GSU80_13005)	ygbM	2675815..2676591 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
GSU80_RS13010 (GSU80_13010)	ygbN	2676680..2678044 (+)	1365	WP_000104459.1	GntP family transporter	-
GSU80_RS13015 (GSU80_13015)	rpoS	2678138..2679130 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GSU80_RS13020 (GSU80_13020)	nlpD	2679193..2680287 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GSU80_RS13025 (GSU80_13025)	pcm	2680472..2681098 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GSU80_RS13030 (GSU80_13030)	surE	2681092..2681853 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GSU80_RS13035 (GSU80_13035)	truD	2681834..2682883 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GSU80_RS13040 (GSU80_13040)	ispF	2682880..2683359 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GSU80_RS13045 (GSU80_13045)	ispD	2683359..2684069 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=358232 GSU80_RS13015 WP_000081550.1 2678138..2679130(-) (rpoS) [Escherichia coli strain BL21-AI]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=358232 GSU80_RS13015 WP_000081550.1 2678138..2679130(-) (rpoS) [Escherichia coli strain BL21-AI]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715