Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | EVJ50_RS10410 | Genome accession | NZ_CP035632 |
| Coordinates | 2124356..2125429 (+) | Length | 357 a.a. |
| NCBI ID | WP_150883881.1 | Uniprot ID | - |
| Organism | Synechococcus sp. RSCCF101 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2119356..2130429
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EVJ50_RS10390 (EVJ50_10380) | - | 2120158..2120406 (-) | 249 | WP_225322897.1 | sulfurtransferase TusA family protein | - |
| EVJ50_RS10395 (EVJ50_10385) | dnaJ | 2120411..2121526 (-) | 1116 | WP_150883879.1 | molecular chaperone DnaJ | - |
| EVJ50_RS10400 (EVJ50_10390) | grpE | 2121602..2122336 (-) | 735 | WP_150883880.1 | nucleotide exchange factor GrpE | - |
| EVJ50_RS10405 (EVJ50_10395) | pilB/pilB1 | 2122434..2124263 (+) | 1830 | WP_191964744.1 | GspE/PulE family protein | Machinery gene |
| EVJ50_RS10410 (EVJ50_10400) | pilT | 2124356..2125429 (+) | 1074 | WP_150883881.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| EVJ50_RS10415 (EVJ50_10405) | - | 2125453..2126718 (+) | 1266 | WP_150883882.1 | type II secretion system F family protein | - |
| EVJ50_RS10420 (EVJ50_10410) | - | 2126720..2127976 (-) | 1257 | WP_150883883.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| EVJ50_RS10425 (EVJ50_10415) | dusA | 2128021..2129061 (+) | 1041 | WP_150883884.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 39282.81 Da Isoelectric Point: 6.1102
>NTDB_id=343273 EVJ50_RS10410 WP_150883881.1 2124356..2125429(+) (pilT) [Synechococcus sp. RSCCF101]
MDLMIEDLMEQLVEGGGSDLHLAAGQPPYGRFSGELRPMLEEPLTEENCNRLIFSILNNAQRKQLEQTWELDCSYGLKGI
SRFRVNVYRQRGSYASCLRALGSKVPSLKVLGLPDVVEAVSHSPKGLVLVTGPTGSGKTTTLAALLQHINESRAEHILTI
EDPIEFVYASDKSLIHQRELNEDTRSFANALRAALREDPDVILIGEMRDLETIQLAIRAAETGHLVFGTLHTSSAAQTVD
RIVDVFPPEQQTQIRVQLSGSLVGVFSQTLCKRSNPKPGQYGRVMAQEIMVNTPAIANLIREGKTAQLYSQIQTGGQHGM
QTLERALANLAMNGEITLEEAKSRSSKPEELKRLVSA
MDLMIEDLMEQLVEGGGSDLHLAAGQPPYGRFSGELRPMLEEPLTEENCNRLIFSILNNAQRKQLEQTWELDCSYGLKGI
SRFRVNVYRQRGSYASCLRALGSKVPSLKVLGLPDVVEAVSHSPKGLVLVTGPTGSGKTTTLAALLQHINESRAEHILTI
EDPIEFVYASDKSLIHQRELNEDTRSFANALRAALREDPDVILIGEMRDLETIQLAIRAAETGHLVFGTLHTSSAAQTVD
RIVDVFPPEQQTQIRVQLSGSLVGVFSQTLCKRSNPKPGQYGRVMAQEIMVNTPAIANLIREGKTAQLYSQIQTGGQHGM
QTLERALANLAMNGEITLEEAKSRSSKPEELKRLVSA
Nucleotide
Download Length: 1074 bp
>NTDB_id=343273 EVJ50_RS10410 WP_150883881.1 2124356..2125429(+) (pilT) [Synechococcus sp. RSCCF101]
ATGGACTTGATGATTGAGGACCTCATGGAGCAGCTCGTGGAGGGCGGGGGCAGTGACCTGCACCTGGCGGCCGGCCAGCC
TCCCTATGGACGCTTCAGCGGGGAGCTGAGGCCGATGCTTGAGGAACCTCTGACCGAGGAGAACTGCAACCGACTCATCT
TTTCGATCCTCAACAACGCCCAGCGCAAACAGCTGGAGCAGACATGGGAGCTGGACTGCTCATACGGTCTCAAGGGCATC
TCCCGCTTCCGGGTCAACGTCTACCGCCAGAGGGGCAGCTACGCCTCCTGCCTGCGGGCGCTCGGCAGCAAGGTGCCCAG
CCTGAAGGTGCTTGGTCTGCCGGACGTGGTGGAGGCCGTGAGCCATTCACCCAAGGGACTGGTATTGGTCACCGGACCAA
CCGGATCCGGGAAGACAACCACGTTGGCCGCTCTGCTCCAACACATCAACGAGTCCAGAGCAGAGCACATTCTCACCATT
GAGGATCCGATCGAATTCGTCTACGCCAGCGATAAGAGTCTGATTCATCAGCGAGAGCTGAATGAGGATACACGCTCCTT
CGCCAATGCATTGAGGGCTGCGCTGCGTGAAGATCCAGATGTGATTCTAATCGGGGAGATGCGAGATCTGGAGACCATTC
AGTTGGCCATCCGTGCCGCAGAGACCGGCCACCTCGTCTTTGGCACATTGCACACCAGCTCGGCAGCCCAGACGGTGGAT
CGCATCGTGGATGTCTTCCCACCTGAACAGCAGACCCAGATCCGTGTGCAACTCAGTGGCAGTCTTGTGGGGGTCTTCTC
CCAAACGCTCTGCAAGCGCTCCAACCCCAAGCCAGGTCAGTATGGCCGGGTCATGGCTCAGGAAATCATGGTGAACACTC
CGGCCATCGCCAACCTGATCCGCGAAGGAAAAACGGCTCAGCTGTATTCCCAGATTCAGACCGGTGGTCAACACGGCATG
CAAACCCTTGAACGCGCCCTCGCCAACCTGGCGATGAATGGGGAGATCACACTGGAGGAAGCCAAGTCGCGGTCCAGCAA
ACCCGAGGAGCTCAAGCGACTCGTGAGCGCCTGA
ATGGACTTGATGATTGAGGACCTCATGGAGCAGCTCGTGGAGGGCGGGGGCAGTGACCTGCACCTGGCGGCCGGCCAGCC
TCCCTATGGACGCTTCAGCGGGGAGCTGAGGCCGATGCTTGAGGAACCTCTGACCGAGGAGAACTGCAACCGACTCATCT
TTTCGATCCTCAACAACGCCCAGCGCAAACAGCTGGAGCAGACATGGGAGCTGGACTGCTCATACGGTCTCAAGGGCATC
TCCCGCTTCCGGGTCAACGTCTACCGCCAGAGGGGCAGCTACGCCTCCTGCCTGCGGGCGCTCGGCAGCAAGGTGCCCAG
CCTGAAGGTGCTTGGTCTGCCGGACGTGGTGGAGGCCGTGAGCCATTCACCCAAGGGACTGGTATTGGTCACCGGACCAA
CCGGATCCGGGAAGACAACCACGTTGGCCGCTCTGCTCCAACACATCAACGAGTCCAGAGCAGAGCACATTCTCACCATT
GAGGATCCGATCGAATTCGTCTACGCCAGCGATAAGAGTCTGATTCATCAGCGAGAGCTGAATGAGGATACACGCTCCTT
CGCCAATGCATTGAGGGCTGCGCTGCGTGAAGATCCAGATGTGATTCTAATCGGGGAGATGCGAGATCTGGAGACCATTC
AGTTGGCCATCCGTGCCGCAGAGACCGGCCACCTCGTCTTTGGCACATTGCACACCAGCTCGGCAGCCCAGACGGTGGAT
CGCATCGTGGATGTCTTCCCACCTGAACAGCAGACCCAGATCCGTGTGCAACTCAGTGGCAGTCTTGTGGGGGTCTTCTC
CCAAACGCTCTGCAAGCGCTCCAACCCCAAGCCAGGTCAGTATGGCCGGGTCATGGCTCAGGAAATCATGGTGAACACTC
CGGCCATCGCCAACCTGATCCGCGAAGGAAAAACGGCTCAGCTGTATTCCCAGATTCAGACCGGTGGTCAACACGGCATG
CAAACCCTTGAACGCGCCCTCGCCAACCTGGCGATGAATGGGGAGATCACACTGGAGGAAGCCAAGTCGCGGTCCAGCAA
ACCCGAGGAGCTCAAGCGACTCGTGAGCGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
53.314 |
97.199 |
0.518 |
| pilT | Acinetobacter baylyi ADP1 |
52.161 |
97.199 |
0.507 |
| pilT | Acinetobacter baumannii strain A118 |
51.873 |
97.199 |
0.504 |
| pilT | Acinetobacter baumannii D1279779 |
51.873 |
97.199 |
0.504 |
| pilT | Acinetobacter nosocomialis M2 |
51.873 |
97.199 |
0.504 |
| pilT | Pseudomonas stutzeri DSM 10701 |
51.873 |
97.199 |
0.504 |
| pilT | Vibrio cholerae strain A1552 |
52.353 |
95.238 |
0.499 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
52.353 |
95.238 |
0.499 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.716 |
98.599 |
0.49 |
| pilT | Neisseria meningitidis 8013 |
49.857 |
97.759 |
0.487 |
| pilT | Neisseria gonorrhoeae MS11 |
49.57 |
97.759 |
0.485 |
| pilT | Legionella pneumophila strain Lp02 |
52.454 |
91.317 |
0.479 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.454 |
91.317 |
0.479 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.462 |
98.319 |
0.378 |