Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | UTEX3055_RS08900 | Genome accession | NZ_CP033061 |
| Coordinates | 1726439..1727527 (+) | Length | 362 a.a. |
| NCBI ID | WP_011378300.1 | Uniprot ID | Q31LG9 |
| Organism | Synechococcus elongatus UTEX 3055 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1721439..1732527
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UTEX3055_RS08890 | grpE | 1723468..1724091 (-) | 624 | WP_011378302.1 | nucleotide exchange factor GrpE | - |
| UTEX3055_RS08895 | pilB/pilB1 | 1724368..1726368 (+) | 2001 | WP_126147630.1 | GspE/PulE family protein | Machinery gene |
| UTEX3055_RS08900 | pilT | 1726439..1727527 (+) | 1089 | WP_011378300.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| UTEX3055_RS08905 | - | 1727552..1728784 (+) | 1233 | WP_011378299.1 | type II secretion system F family protein | - |
| UTEX3055_RS08910 | - | 1728790..1729344 (+) | 555 | WP_011244335.1 | hypothetical protein | - |
| UTEX3055_RS08915 | - | 1729309..1730556 (-) | 1248 | WP_126147631.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| UTEX3055_RS08920 | dusA | 1730583..1731614 (+) | 1032 | WP_126147632.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| UTEX3055_RS08925 | - | 1731711..1731965 (+) | 255 | WP_011378297.1 | helix-hairpin-helix domain-containing protein | - |
Sequence
Protein
Download Length: 362 a.a. Molecular weight: 39881.02 Da Isoelectric Point: 6.3643
>NTDB_id=321027 UTEX3055_RS08900 WP_011378300.1 1726439..1727527(+) (pilT) [Synechococcus elongatus UTEX 3055]
MELMIEDLMEKLVEMGGSDLHLSVGLPPYFRISGKLTPIGDEPMGEEQCQRLIFSMLNNTQRKMLEQNWELDCSYGIRGL
ARFRVNVYKDKGTYAACLRALSAKVPEFNDLGLPQVVREMSEKPRGLILVTGPTGSGKTTTLAAVIELINRSRAEHIITV
EDPIEFVYQPAKSIIHQRQLGEDTKSFANALRAALREDPDIILVGEMRDLETIQLAITAAETGHLVFGTLHTSSAAQTVD
RIIDVFPAEKQTQVRVQLSNSLIAVFSQTLVQKRNARPGSFGRVLAQEIMIVTPAISNLIREGKTAQIYSQIQTGGKLGM
QTLEKALADLYKAGEITFEAAASKTSKPDEMQRLIGNVPVAA
MELMIEDLMEKLVEMGGSDLHLSVGLPPYFRISGKLTPIGDEPMGEEQCQRLIFSMLNNTQRKMLEQNWELDCSYGIRGL
ARFRVNVYKDKGTYAACLRALSAKVPEFNDLGLPQVVREMSEKPRGLILVTGPTGSGKTTTLAAVIELINRSRAEHIITV
EDPIEFVYQPAKSIIHQRQLGEDTKSFANALRAALREDPDIILVGEMRDLETIQLAITAAETGHLVFGTLHTSSAAQTVD
RIIDVFPAEKQTQVRVQLSNSLIAVFSQTLVQKRNARPGSFGRVLAQEIMIVTPAISNLIREGKTAQIYSQIQTGGKLGM
QTLEKALADLYKAGEITFEAAASKTSKPDEMQRLIGNVPVAA
Nucleotide
Download Length: 1089 bp
>NTDB_id=321027 UTEX3055_RS08900 WP_011378300.1 1726439..1727527(+) (pilT) [Synechococcus elongatus UTEX 3055]
ATGGAGCTGATGATTGAAGACCTGATGGAAAAGCTGGTGGAGATGGGTGGATCTGACCTCCACCTTTCCGTTGGTCTGCC
GCCCTATTTTCGAATCAGTGGCAAATTGACACCGATCGGCGATGAGCCGATGGGCGAAGAACAGTGCCAACGCCTGATTT
TCAGCATGTTGAACAACACGCAACGCAAAATGCTGGAGCAGAACTGGGAGTTAGACTGCTCCTACGGCATCCGTGGTCTA
GCTCGGTTTCGGGTCAACGTCTATAAAGACAAGGGAACCTATGCGGCCTGTTTGCGGGCACTCAGTGCCAAGGTCCCAGA
GTTTAACGATCTCGGCCTGCCACAGGTTGTCCGGGAAATGAGCGAGAAACCGCGAGGGCTGATCCTAGTGACAGGGCCCA
CGGGTTCAGGCAAGACCACAACTTTGGCTGCAGTGATTGAACTAATCAATCGCAGCCGTGCTGAACATATCATCACGGTT
GAAGACCCAATTGAGTTTGTCTATCAACCGGCAAAAAGTATCATCCACCAGCGTCAGCTGGGTGAGGATACCAAGAGTTT
TGCCAACGCGCTGCGAGCTGCCCTGCGGGAAGACCCTGACATTATCCTCGTGGGTGAGATGCGGGACTTGGAAACGATCC
AGTTGGCAATCACTGCTGCAGAGACCGGCCACCTTGTCTTTGGTACCTTACACACCAGCTCTGCAGCCCAAACCGTTGAC
CGGATTATTGACGTTTTCCCGGCTGAAAAACAGACACAGGTGCGGGTGCAACTCTCGAACTCTTTGATTGCAGTTTTTAG
TCAGACCCTAGTACAGAAACGCAATGCTCGTCCGGGCAGTTTTGGCCGAGTTTTGGCTCAGGAAATTATGATTGTGACGC
CGGCAATCTCGAACTTGATTCGGGAAGGAAAAACGGCGCAGATCTATTCCCAAATTCAGACGGGTGGCAAGTTGGGAATG
CAGACGCTCGAAAAAGCGCTGGCAGACCTCTACAAAGCAGGTGAAATTACCTTTGAAGCAGCTGCATCCAAAACGTCGAA
ACCTGACGAGATGCAACGACTCATCGGTAATGTTCCGGTTGCTGCATAG
ATGGAGCTGATGATTGAAGACCTGATGGAAAAGCTGGTGGAGATGGGTGGATCTGACCTCCACCTTTCCGTTGGTCTGCC
GCCCTATTTTCGAATCAGTGGCAAATTGACACCGATCGGCGATGAGCCGATGGGCGAAGAACAGTGCCAACGCCTGATTT
TCAGCATGTTGAACAACACGCAACGCAAAATGCTGGAGCAGAACTGGGAGTTAGACTGCTCCTACGGCATCCGTGGTCTA
GCTCGGTTTCGGGTCAACGTCTATAAAGACAAGGGAACCTATGCGGCCTGTTTGCGGGCACTCAGTGCCAAGGTCCCAGA
GTTTAACGATCTCGGCCTGCCACAGGTTGTCCGGGAAATGAGCGAGAAACCGCGAGGGCTGATCCTAGTGACAGGGCCCA
CGGGTTCAGGCAAGACCACAACTTTGGCTGCAGTGATTGAACTAATCAATCGCAGCCGTGCTGAACATATCATCACGGTT
GAAGACCCAATTGAGTTTGTCTATCAACCGGCAAAAAGTATCATCCACCAGCGTCAGCTGGGTGAGGATACCAAGAGTTT
TGCCAACGCGCTGCGAGCTGCCCTGCGGGAAGACCCTGACATTATCCTCGTGGGTGAGATGCGGGACTTGGAAACGATCC
AGTTGGCAATCACTGCTGCAGAGACCGGCCACCTTGTCTTTGGTACCTTACACACCAGCTCTGCAGCCCAAACCGTTGAC
CGGATTATTGACGTTTTCCCGGCTGAAAAACAGACACAGGTGCGGGTGCAACTCTCGAACTCTTTGATTGCAGTTTTTAG
TCAGACCCTAGTACAGAAACGCAATGCTCGTCCGGGCAGTTTTGGCCGAGTTTTGGCTCAGGAAATTATGATTGTGACGC
CGGCAATCTCGAACTTGATTCGGGAAGGAAAAACGGCGCAGATCTATTCCCAAATTCAGACGGGTGGCAAGTTGGGAATG
CAGACGCTCGAAAAAGCGCTGGCAGACCTCTACAAAGCAGGTGAAATTACCTTTGAAGCAGCTGCATCCAAAACGTCGAA
ACCTGACGAGATGCAACGACTCATCGGTAATGTTCCGGTTGCTGCATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
53.314 |
95.856 |
0.511 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.623 |
95.304 |
0.511 |
| pilT | Legionella pneumophila strain Lp02 |
53.623 |
95.304 |
0.511 |
| pilT | Pseudomonas aeruginosa PAK |
53.026 |
95.856 |
0.508 |
| pilT | Acinetobacter baylyi ADP1 |
53.333 |
95.304 |
0.508 |
| pilT | Acinetobacter baumannii strain A118 |
52.464 |
95.304 |
0.5 |
| pilT | Acinetobacter nosocomialis M2 |
52.464 |
95.304 |
0.5 |
| pilT | Acinetobacter baumannii D1279779 |
52.464 |
95.304 |
0.5 |
| pilT | Neisseria gonorrhoeae MS11 |
49.857 |
96.409 |
0.481 |
| pilT | Neisseria meningitidis 8013 |
49.857 |
96.409 |
0.481 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.857 |
96.685 |
0.472 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.412 |
93.923 |
0.464 |
| pilT | Vibrio cholerae strain A1552 |
49.412 |
93.923 |
0.464 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.601 |
96.961 |
0.384 |