Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   UTEX3055_RS08895 Genome accession   NZ_CP033061
Coordinates   1724368..1726368 (+) Length   666 a.a.
NCBI ID   WP_126147630.1    Uniprot ID   -
Organism   Synechococcus elongatus UTEX 3055     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1719368..1731368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS08875 - 1719876..1720127 (-) 252 WP_011244328.1 sulfurtransferase TusA family protein -
  UTEX3055_RS08880 dnaJ 1720124..1721254 (-) 1131 WP_126147628.1 molecular chaperone DnaJ -
  UTEX3055_RS08885 dnaK 1721396..1723363 (-) 1968 WP_126147629.1 molecular chaperone DnaK -
  UTEX3055_RS08890 grpE 1723468..1724091 (-) 624 WP_011378302.1 nucleotide exchange factor GrpE -
  UTEX3055_RS08895 pilB/pilB1 1724368..1726368 (+) 2001 WP_126147630.1 GspE/PulE family protein Machinery gene
  UTEX3055_RS08900 pilT 1726439..1727527 (+) 1089 WP_011378300.1 type IV pilus twitching motility protein PilT Machinery gene
  UTEX3055_RS08905 - 1727552..1728784 (+) 1233 WP_011378299.1 type II secretion system F family protein -
  UTEX3055_RS08910 - 1728790..1729344 (+) 555 WP_011244335.1 hypothetical protein -
  UTEX3055_RS08915 - 1729309..1730556 (-) 1248 WP_126147631.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74203.83 Da        Isoelectric Point: 5.0768

>NTDB_id=321026 UTEX3055_RS08895 WP_126147630.1 1724368..1726368(+) (pilB/pilB1) [Synechococcus elongatus UTEX 3055]
MPDQPISPRYALIALNQFSSFGNKLVQAGFVDPEQLQTALVESRRSGQSLPQVISALTGQSLPPELMQQYRRQQLFELKI
LHGVESLNPDQGQYSEEVIHELIADLVPIETCRRHQLVPLERHEAPPRAVVAMVDPNNLDALDELNRLLRPRGYTLQRLV
ITLEDYERLIAGYLDQQLERQQAMQAKQLGDFSEELANLDNLELTEISVQEEDLAKALQEADDAPIVSLANKILLKALTE
GASDIHVEPQEDGLRVRLRRDGVLHQEFGTLPKKIQPALISRLKIMANLDIAERRVPQDGRIRRMFQGRKIDFRVNSLPS
HFGEKICMRLLDNSATQLGLDQLITDEEALALVRDMGSRPYGLILVTGPTGSGKSTSLYSLLAERNDPAININTAEDPIE
YTLPGLTQVQVLREKGMNFASILRAFMRQDPDVILVGETRDLETARTAIEAALTGHLVLTTLHANDAPSAIARLSEMGVE
PYLVSGSLIGVVSQRLMRRVCPDCRVPYTPSPEELGRYGLSASQELDVTFYKAKTLTSDSLAQARSQGQVCRTCRGTGYK
GRVGVYEVMRVNEVLQVAINQGLPTERLKEIAVEQGMKTLLSYSLELVRQGYTTFEEVDRVTFTDSGVEAELKAKRKLGL
TCNTCGAGLQPEWLDCPYCLTPRFGN

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=321026 UTEX3055_RS08895 WP_126147630.1 1724368..1726368(+) (pilB/pilB1) [Synechococcus elongatus UTEX 3055]
ATGCCAGACCAACCGATCTCTCCCCGTTACGCCCTGATTGCCCTCAATCAGTTTTCATCGTTTGGTAACAAGCTGGTTCA
AGCGGGCTTTGTCGATCCCGAGCAACTACAGACAGCCCTGGTGGAAAGTCGCCGCAGCGGCCAGTCGCTGCCTCAAGTGA
TCTCAGCCCTCACTGGCCAGTCTTTGCCCCCCGAACTGATGCAGCAGTATCGGCGGCAGCAGTTGTTTGAACTCAAAATT
CTGCACGGGGTCGAGTCGCTTAACCCAGACCAGGGGCAGTACTCCGAAGAGGTCATCCACGAGCTGATCGCTGACTTAGT
GCCGATCGAAACCTGTCGCCGTCATCAACTCGTCCCCCTCGAACGCCATGAAGCGCCGCCGCGAGCCGTGGTCGCTATGG
TCGACCCCAATAACCTCGATGCCTTGGACGAACTCAACCGGCTACTGCGACCCAGGGGCTACACCCTACAGCGGCTCGTG
ATTACCCTCGAGGATTACGAACGGCTGATTGCGGGCTATCTGGATCAGCAGCTGGAACGTCAGCAGGCTATGCAAGCCAA
GCAGCTGGGGGATTTTTCCGAGGAGCTTGCGAACCTCGACAACTTGGAACTGACGGAAATTTCAGTCCAAGAAGAGGATC
TTGCCAAGGCGTTGCAAGAGGCCGATGATGCGCCGATCGTGAGTCTCGCTAACAAAATCCTGCTGAAGGCTTTGACGGAA
GGCGCTTCCGATATCCACGTCGAGCCCCAGGAAGACGGGCTACGAGTGCGACTGCGACGAGATGGAGTCTTGCACCAAGA
ATTTGGGACGCTTCCCAAAAAAATTCAACCCGCCCTGATCTCTCGGCTAAAGATCATGGCCAATCTGGACATCGCCGAGC
GGCGGGTCCCTCAAGATGGCCGCATTCGACGCATGTTCCAAGGCCGCAAGATCGACTTCCGGGTCAACAGCCTCCCTAGT
CACTTCGGTGAAAAGATTTGTATGCGGTTGCTGGACAACTCAGCAACCCAACTGGGTTTAGACCAGTTGATTACTGATGA
AGAAGCGTTGGCCTTGGTGCGTGACATGGGTAGTCGCCCCTATGGTCTCATTCTCGTAACAGGCCCTACGGGGTCTGGAA
AGTCGACGAGCCTGTACTCGCTGCTGGCGGAGCGCAATGATCCGGCGATCAATATCAACACCGCTGAAGACCCGATCGAG
TACACCTTGCCCGGGCTGACCCAAGTGCAGGTTCTCCGGGAGAAAGGCATGAACTTTGCCTCAATTCTCCGGGCCTTCAT
GCGGCAGGATCCCGATGTGATTCTGGTGGGTGAAACGCGCGATTTGGAAACGGCCCGCACGGCGATCGAAGCGGCCTTGA
CCGGCCACTTAGTCTTGACAACCCTGCATGCGAACGATGCTCCGAGTGCGATCGCGAGGCTGAGTGAAATGGGAGTGGAG
CCCTACCTAGTCTCGGGGTCACTGATTGGGGTGGTCTCGCAACGTTTGATGCGCCGCGTCTGCCCCGACTGTCGTGTTCC
CTACACCCCCAGCCCAGAAGAACTAGGTCGCTATGGACTGTCGGCGAGTCAGGAGCTGGATGTCACCTTTTATAAGGCCA
AAACATTGACGTCGGATTCGCTGGCTCAGGCGCGATCGCAGGGACAGGTTTGCAGAACTTGTCGTGGGACTGGCTACAAG
GGCCGCGTCGGGGTTTATGAGGTGATGCGGGTCAATGAAGTGCTTCAGGTGGCGATCAACCAAGGACTCCCGACTGAACG
CCTCAAGGAAATTGCGGTGGAGCAGGGGATGAAAACCTTACTCTCCTACAGCTTGGAGTTGGTCCGTCAGGGATACACCA
CCTTTGAGGAAGTCGACCGGGTCACCTTTACCGATTCTGGCGTGGAGGCCGAACTCAAGGCCAAGCGCAAACTAGGCCTG
ACCTGCAACACCTGTGGGGCGGGTCTGCAACCCGAATGGCTGGACTGCCCCTATTGTCTGACACCCCGCTTTGGGAACTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(232-499)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

61.153

98.949

0.605

Multiple sequence alignment