Detailed information NTG0317316

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E7Z57_RS03885
• Genome accession: NZ_CP039339
• Coordinates: 751530..752663 (+)
• Length: 377 a.a.
• NCBI ID: WP_064049718.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain UW386
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 746530..757663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E7Z57_RS03860 (E7Z57_03860)	-	746610..747716 (+)	1107	WP_138928543.1	alkene reductase	-
E7Z57_RS03865 (E7Z57_03865)	-	747789..748763 (-)	975	WP_138928544.1	NADPH:quinone oxidoreductase family protein	-
E7Z57_RS03870 (E7Z57_03870)	surE	748956..749711 (+)	756	WP_011001154.1	5'/3'-nucleotidase SurE	-
E7Z57_RS03875 (E7Z57_03875)	-	749727..750692 (+)	966	WP_138928545.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
E7Z57_RS03880 (E7Z57_03880)	-	750694..751521 (+)	828	WP_138928546.1	peptidoglycan DD-metalloendopeptidase family protein	-
E7Z57_RS03885 (E7Z57_03885)	rpoS	751530..752663 (+)	1134	WP_064049718.1	RNA polymerase sigma factor RpoS	Regulator
E7Z57_RS03890 (E7Z57_03890)	-	752697..753566 (-)	870	WP_138928547.1	endonuclease/exonuclease/phosphatase family protein	-
E7Z57_RS03895 (E7Z57_03895)	rlmD	753721..755073 (+)	1353	WP_064049720.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
E7Z57_RS03900 (E7Z57_03900)	-	755158..755859 (-)	702	WP_138928548.1	Bax inhibitor-1/YccA family protein	-
E7Z57_RS03905 (E7Z57_03905)	ndk	756228..756653 (+)	426	WP_003268504.1	nucleoside-diphosphate kinase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41932.90 Da
• Isoelectric Point: 4.6805

>NTDB_id=317316 E7Z57_RS03885 WP_064049718.1 751530..752663(+) (rpoS) [Ralstonia pseudosolanacearum strain UW386]
MPRQKAATSANPADETIGTVDSPNAPNGRSGRRARAAAPAASDDIEVVDPLVDEVPAAEPADIADTSDANDSADESDEED
EDAEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTDEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=317316 E7Z57_RS03885 WP_064049718.1 751530..752663(+) (rpoS) [Ralstonia pseudosolanacearum strain UW386]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCACCGTCGATAGCCCGAACGCTCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGCCGCAGCGCCGGCAGCCTCCGATGACATCGAAGTCGTCGATCCCCTGGTCGACG
AGGTGCCCGCCGCCGAGCCCGCCGACATCGCCGATACCTCTGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGCCGAGGAAGCCGCGCCCGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCCGACACCGTCCAGCA
CTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAGCTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AATTCGCCGCGCGGCAGGTGATGATCGAGCGCAACCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGATGAGGTGCAGGACGTGCTCTCGCTCAACGAGCA
CACCACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTGTCGGACGAGCATGGCGCCT
CGCCGGACCAGGAAGTCGCGCACCGCGAGCTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGC
TACGTGGTGGAGCGCCGGTTCGGCCTCAACCACATCGAACCGGCCACCCTCGAAGAGCTGGCCGCCGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCATCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

• Sigma-70 region 3 (Sigma70_r3) (221-298)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.165	80.371	0.403