Detailed information NTG0317316

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: D7I46_RS08900
• Genome accession: NZ_CP032627
• Coordinates: 1910062..1910364 (-)
• Length: 100 a.a.
• NCBI ID: WP_120772581.1
• Uniprot ID: -
• Organism: Lactococcus allomyrinae strain 1JSPR-7
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1905062..1915364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D7I46_RS08865 (D7I46_08865)	-	1905327..1906058 (-)	732	WP_120772575.1	metal ABC transporter ATP-binding protein	-
D7I46_RS08870 (D7I46_08870)	-	1906449..1907291 (-)	843	WP_120772576.1	metal ABC transporter solute-binding protein, Zn/Mn family	-
D7I46_RS08875 (D7I46_08875)	-	1907926..1908384 (-)	459	WP_120772577.1	zinc-dependent MarR family transcriptional regulator	-
D7I46_RS08880 (D7I46_08880)	comGG	1908675..1909022 (-)	348	WP_240424384.1	competence type IV pilus minor pilin ComGG	-
D7I46_RS08885 (D7I46_08885)	comGF	1909000..1909419 (-)	420	WP_120772579.1	competence type IV pilus minor pilin ComGF	Machinery gene
D7I46_RS08890 (D7I46_08890)	comGE	1909403..1909699 (-)	297	WP_120772580.1	competence type IV pilus minor pilin ComGE	Machinery gene
D7I46_RS08895 (D7I46_08895)	comGD	1909671..1910078 (-)	408	WP_240424386.1	competence type IV pilus minor pilin ComGD	Machinery gene
D7I46_RS08900 (D7I46_08900)	comGC	1910062..1910364 (-)	303	WP_120772581.1	competence type IV pilus major pilin ComGC	Machinery gene
D7I46_RS13665	comGB	1910369..1910647 (-)	279	WP_276116903.1	type II secretion system F family protein	Machinery gene
D7I46_RS08905 (D7I46_08905)	comGB	1910656..1911342 (-)	687	WP_276116904.1	type II secretion system F family protein	Machinery gene
D7I46_RS08910 (D7I46_08910)	comGA	1911296..1912279 (-)	984	WP_120772582.1	competence type IV pilus ATPase ComGA	Machinery gene
D7I46_RS08915 (D7I46_08915)	-	1912377..1912733 (-)	357	WP_120772583.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 100 a.a.
• Molecular weight: 11328.14 Da
• Isoelectric Point: 4.4179

>NTDB_id=317316 D7I46_RS08900 WP_120772581.1 1910062..1910364(-) (comGC) [Lactococcus allomyrinae strain 1JSPR-7]
MRKDIKAFTLIEMLIVLAIISILILLFVPNLLKEKEQVQKTGEAAVVKVVESQAQLYELDHTETPTLSDLVAADMITKKQ
VESYDDYYAQNKGETRELAD

Nucleotide

• Length: 303 bp

>NTDB_id=317316 D7I46_RS08900 WP_120772581.1 1910062..1910364(-) (comGC) [Lactococcus allomyrinae strain 1JSPR-7]
ATGAGAAAAGATATTAAAGCGTTTACTTTGATTGAAATGTTGATTGTGCTGGCAATTATTAGTATTTTAATTTTGTTGTT
TGTACCTAATCTATTAAAAGAAAAAGAGCAAGTGCAAAAGACTGGCGAAGCGGCTGTGGTGAAGGTGGTTGAAAGCCAAG
CACAATTGTACGAACTGGATCACACAGAAACACCGACTTTGTCAGATTTGGTGGCAGCGGACATGATTACTAAAAAGCAA
GTTGAGAGCTATGATGACTATTATGCGCAAAATAAGGGAGAAACACGTGAATTGGCAGATTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (3-26)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	77	100	0.77
comYC	Streptococcus gordonii str. Challis substr. CH1	62.887	97	0.61
comYC	Streptococcus mutans UA140	61.616	99	0.61
comYC	Streptococcus mutans UA159	61.616	99	0.61
comGC/cglC	Streptococcus mitis SK321	59.375	96	0.57
comGC/cglC	Streptococcus mitis NCTC 12261	59.783	92	0.55
comGC/cglC	Streptococcus pneumoniae Rx1	55.208	96	0.53
comGC/cglC	Streptococcus pneumoniae D39	55.208	96	0.53
comGC/cglC	Streptococcus pneumoniae TIGR4	55.208	96	0.53
comGC/cglC	Streptococcus pneumoniae R6	55.208	96	0.53
comYC	Streptococcus suis isolate S10	61.25	80	0.49
comGC	Staphylococcus aureus N315	46.835	79	0.37
comGC	Staphylococcus aureus MW2	46.835	79	0.37