Detailed information NTG0317317

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: D7I46_RS08905
• Genome accession: NZ_CP032627
• Coordinates: 1910656..1911342 (-)
• Length: 228 a.a.
• NCBI ID: WP_276116904.1
• Uniprot ID: -
• Organism: Lactococcus allomyrinae strain 1JSPR-7
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1905656..1916342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D7I46_RS08870 (D7I46_08870)	-	1906449..1907291 (-)	843	WP_120772576.1	metal ABC transporter solute-binding protein, Zn/Mn family	-
D7I46_RS08875 (D7I46_08875)	-	1907926..1908384 (-)	459	WP_120772577.1	zinc-dependent MarR family transcriptional regulator	-
D7I46_RS08880 (D7I46_08880)	comGG	1908675..1909022 (-)	348	WP_240424384.1	competence type IV pilus minor pilin ComGG	-
D7I46_RS08885 (D7I46_08885)	comGF	1909000..1909419 (-)	420	WP_120772579.1	competence type IV pilus minor pilin ComGF	Machinery gene
D7I46_RS08890 (D7I46_08890)	comGE	1909403..1909699 (-)	297	WP_120772580.1	competence type IV pilus minor pilin ComGE	Machinery gene
D7I46_RS08895 (D7I46_08895)	comGD	1909671..1910078 (-)	408	WP_240424386.1	competence type IV pilus minor pilin ComGD	Machinery gene
D7I46_RS08900 (D7I46_08900)	comGC	1910062..1910364 (-)	303	WP_120772581.1	competence type IV pilus major pilin ComGC	Machinery gene
D7I46_RS13665	comGB	1910369..1910647 (-)	279	WP_276116903.1	type II secretion system F family protein	Machinery gene
D7I46_RS08905 (D7I46_08905)	comGB	1910656..1911342 (-)	687	WP_276116904.1	type II secretion system F family protein	Machinery gene
D7I46_RS08910 (D7I46_08910)	comGA	1911296..1912279 (-)	984	WP_120772582.1	competence type IV pilus ATPase ComGA	Machinery gene
D7I46_RS08915 (D7I46_08915)	-	1912377..1912733 (-)	357	WP_120772583.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26126.25 Da
• Isoelectric Point: 10.4337

>NTDB_id=317317 D7I46_RS08905 WP_276116904.1 1910656..1911342(-) (comGB) [Lactococcus allomyrinae strain 1JSPR-7]
MKQTKLIQLMANLTANGFHFGEIVEFLGLSHLVEQEFTLKMRAGLSAGQSLSEILEALNFSKNVVTQIELVEFHGHLSET
LLFIEQNLRQQLTVKKKLVGLLTYPIILLVFLVGIMWGLKNYLLPQLDSGRSWAMILINHLPVLFVSTFVFLSVLTVLGV
FIFKKKPASRTFIFLARCPFLSEFIRLYLTAYFAREWGNLLAQGVDLKKILIIMRRQKSRIFSEVGKY

Nucleotide

• Length: 687 bp

>NTDB_id=317317 D7I46_RS08905 WP_276116904.1 1910656..1911342(-) (comGB) [Lactococcus allomyrinae strain 1JSPR-7]
GTGAAACAAACGAAATTGATTCAGCTGATGGCAAATCTAACTGCTAATGGTTTTCATTTTGGCGAAATTGTTGAATTTCT
TGGATTGTCACATTTAGTTGAGCAAGAATTTACGTTGAAGATGCGTGCAGGTCTTTCGGCTGGTCAATCTCTTTCCGAAA
TTTTGGAGGCATTGAATTTTTCTAAAAATGTAGTGACCCAGATTGAATTAGTTGAATTTCATGGTCATTTGTCGGAGACT
TTGTTATTTATTGAGCAAAATCTACGGCAGCAGCTGACGGTAAAAAAGAAATTAGTTGGATTGTTAACTTATCCAATTAT
TTTGCTTGTTTTTCTAGTGGGAATCATGTGGGGCTTAAAAAATTATTTACTCCCACAGTTGGATTCTGGGAGAAGCTGGG
CAATGATTTTGATTAATCATTTACCAGTACTCTTTGTCAGTACTTTTGTTTTTTTGTCAGTACTGACAGTTTTAGGAGTT
TTTATTTTTAAGAAGAAACCAGCAAGTCGAACTTTTATTTTCTTAGCAAGATGCCCATTTCTGTCAGAATTTATCCGTTT
ATATTTAACGGCTTATTTTGCAAGAGAATGGGGTAATCTTTTAGCTCAAGGTGTGGATTTAAAGAAAATTTTAATCATCA
TGAGAAGACAAAAAAGTCGAATTTTTTCAGAGGTGGGGAAGTATTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (7-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Lactococcus lactis subsp. cremoris KW2	61.504	99.123	0.61
comYB	Streptococcus gordonii str. Challis substr. CH1	49.558	99.123	0.491
comYB	Streptococcus mutans UA140	48.879	97.807	0.478
comYB	Streptococcus mutans UA159	48.879	97.807	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	47.345	99.123	0.469
comGB/cglB	Streptococcus mitis SK321	46.46	99.123	0.461
comGB/cglB	Streptococcus pneumoniae Rx1	45.575	99.123	0.452
comGB/cglB	Streptococcus pneumoniae D39	45.575	99.123	0.452
comGB/cglB	Streptococcus pneumoniae R6	45.575	99.123	0.452
comGB/cglB	Streptococcus pneumoniae TIGR4	45.575	99.123	0.452