Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   D7I46_RS08910 Genome accession   NZ_CP032627
Coordinates   1911296..1912279 (-) Length   327 a.a.
NCBI ID   WP_120772582.1    Uniprot ID   A0A387BF46
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1906296..1917279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS08870 (D7I46_08870) - 1906449..1907291 (-) 843 WP_120772576.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  D7I46_RS08875 (D7I46_08875) - 1907926..1908384 (-) 459 WP_120772577.1 zinc-dependent MarR family transcriptional regulator -
  D7I46_RS08880 (D7I46_08880) comGG 1908675..1909022 (-) 348 WP_240424384.1 competence type IV pilus minor pilin ComGG -
  D7I46_RS08885 (D7I46_08885) comGF 1909000..1909419 (-) 420 WP_120772579.1 competence type IV pilus minor pilin ComGF Machinery gene
  D7I46_RS08890 (D7I46_08890) comGE 1909403..1909699 (-) 297 WP_120772580.1 competence type IV pilus minor pilin ComGE Machinery gene
  D7I46_RS08895 (D7I46_08895) comGD 1909671..1910078 (-) 408 WP_240424386.1 competence type IV pilus minor pilin ComGD Machinery gene
  D7I46_RS08900 (D7I46_08900) comGC 1910062..1910364 (-) 303 WP_120772581.1 competence type IV pilus major pilin ComGC Machinery gene
  D7I46_RS13665 comGB 1910369..1910647 (-) 279 WP_276116903.1 type II secretion system F family protein Machinery gene
  D7I46_RS08905 (D7I46_08905) comGB 1910656..1911342 (-) 687 WP_276116904.1 type II secretion system F family protein Machinery gene
  D7I46_RS08910 (D7I46_08910) comGA 1911296..1912279 (-) 984 WP_120772582.1 competence type IV pilus ATPase ComGA Machinery gene
  D7I46_RS08915 (D7I46_08915) - 1912377..1912733 (-) 357 WP_120772583.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37590.96 Da        Isoelectric Point: 5.7725

>NTDB_id=317318 D7I46_RS08910 WP_120772582.1 1911296..1912279(-) (comGA) [Lactococcus allomyrinae strain 1JSPR-7]
MIQDKASEILTDAMTKESHDIYFIPHQEGYDVYFREGDKRLFFERLDKELGQAIISHFKFLAGMNTGEKRRTQLGACWYS
LDIGVKRLRMSTVGDFEGRESLVIRILREESRKLEFWFRDEELLASLHCKRGLYLFAGPVGSGKTSLMVELAKKNFMNKQ
VITIEDPVEIVESNFVQLQVNEVIGNGYDELIKCSLRHRPDLLIVGEIRDKKTARAVLRASLTGYTVFSTVHARSISGVW
DRLLELGLSEWELKNSLRRVIYQRLIAGKGVVDIAESEFEKWNAQRWNEKMARLFEDGYLTAVEVEAEKVEFGETNEIDS
ADGKSNC

Nucleotide


Download         Length: 984 bp        

>NTDB_id=317318 D7I46_RS08910 WP_120772582.1 1911296..1912279(-) (comGA) [Lactococcus allomyrinae strain 1JSPR-7]
ATGATTCAAGATAAAGCAAGTGAAATTTTAACTGATGCGATGACTAAAGAAAGTCATGATATTTATTTTATTCCTCATCA
GGAGGGATACGATGTTTATTTTAGAGAAGGAGATAAGCGGTTATTCTTTGAGCGTTTAGACAAGGAGTTGGGACAGGCGA
TAATTTCGCATTTTAAATTTCTTGCTGGGATGAATACAGGGGAAAAACGCAGAACTCAGCTAGGGGCTTGTTGGTATTCA
CTGGATATTGGTGTTAAACGTTTGAGGATGTCTACAGTTGGAGATTTTGAGGGGAGAGAGTCCTTGGTCATTCGTATTTT
AAGAGAGGAATCAAGGAAGTTGGAGTTTTGGTTTCGGGATGAGGAGCTATTAGCCAGTTTACATTGTAAGCGAGGGTTAT
ATTTGTTTGCGGGTCCGGTAGGCTCTGGAAAAACATCCTTGATGGTGGAACTTGCAAAGAAGAATTTCATGAATAAACAA
GTAATAACGATTGAAGACCCCGTTGAAATTGTAGAATCTAATTTTGTGCAGTTGCAGGTAAATGAAGTCATTGGCAATGG
TTATGATGAACTCATTAAATGCTCATTGCGCCATCGTCCTGATTTATTAATTGTTGGAGAGATTCGTGATAAAAAGACAG
CACGTGCGGTGCTAAGAGCGAGTTTGACTGGTTATACCGTATTTTCTACGGTTCATGCGCGGTCTATTTCAGGAGTGTGG
GATAGACTTTTAGAGCTAGGGCTGAGTGAATGGGAATTAAAAAATAGTTTGCGTAGGGTGATTTATCAGCGTCTTATTGC
TGGGAAAGGAGTGGTTGATATTGCAGAAAGTGAATTTGAAAAATGGAATGCTCAAAGGTGGAATGAGAAAATGGCGAGAT
TATTTGAAGATGGATATCTTACAGCTGTTGAGGTTGAAGCGGAAAAAGTTGAGTTTGGTGAAACAAACGAAATTGATTCA
GCTGATGGCAAATCTAACTGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387BF46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Lactococcus lactis subsp. cremoris KW2

62.883

99.694

0.627
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

56.09

95.413

0.535
  comGA/cglA/cilD Streptococcus pneumoniae D39

56.09

95.413

0.535
  comGA/cglA/cilD Streptococcus pneumoniae R6

56.09

95.413

0.535
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

56.09

95.413

0.535
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

56.09

95.413

0.535
  comYA Streptococcus mutans UA159

55.128

95.413

0.526
  comYA Streptococcus mutans UA140

54.808

95.413

0.523
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

53.698

95.107

0.511
  comYA Streptococcus gordonii str. Challis substr. CH1

53.871

94.801

0.511

Multiple sequence alignment