Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   D7I46_RS13665 Genome accession   NZ_CP032627
Coordinates   1910369..1910647 (-) Length   92 a.a.
NCBI ID   WP_276116903.1    Uniprot ID   -
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1905369..1915647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS08870 (D7I46_08870) - 1906449..1907291 (-) 843 WP_120772576.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  D7I46_RS08875 (D7I46_08875) - 1907926..1908384 (-) 459 WP_120772577.1 zinc-dependent MarR family transcriptional regulator -
  D7I46_RS08880 (D7I46_08880) comGG 1908675..1909022 (-) 348 WP_240424384.1 competence type IV pilus minor pilin ComGG -
  D7I46_RS08885 (D7I46_08885) comGF 1909000..1909419 (-) 420 WP_120772579.1 competence type IV pilus minor pilin ComGF Machinery gene
  D7I46_RS08890 (D7I46_08890) comGE 1909403..1909699 (-) 297 WP_120772580.1 competence type IV pilus minor pilin ComGE Machinery gene
  D7I46_RS08895 (D7I46_08895) comGD 1909671..1910078 (-) 408 WP_240424386.1 competence type IV pilus minor pilin ComGD Machinery gene
  D7I46_RS08900 (D7I46_08900) comGC 1910062..1910364 (-) 303 WP_120772581.1 competence type IV pilus major pilin ComGC Machinery gene
  D7I46_RS13665 comGB 1910369..1910647 (-) 279 WP_276116903.1 type II secretion system F family protein Machinery gene
  D7I46_RS08905 (D7I46_08905) comGB 1910656..1911342 (-) 687 WP_276116904.1 type II secretion system F family protein Machinery gene
  D7I46_RS08910 (D7I46_08910) comGA 1911296..1912279 (-) 984 WP_120772582.1 competence type IV pilus ATPase ComGA Machinery gene
  D7I46_RS08915 (D7I46_08915) - 1912377..1912733 (-) 357 WP_120772583.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10459.66 Da        Isoelectric Point: 3.9393

>NTDB_id=317334 D7I46_RS13665 WP_276116903.1 1910369..1910647(-) (comGB) [Lactococcus allomyrinae strain 1JSPR-7]
MEAGLNFDVAVSQLEFLAPELAIMIEYGAMKDKLGLELLLYSEECWGIFFAKVERAMQWIQPIVFIFVALMIILLYVAML
LPIYSNMGTMMG

Nucleotide


Download         Length: 279 bp        

>NTDB_id=317334 D7I46_RS13665 WP_276116903.1 1910369..1910647(-) (comGB) [Lactococcus allomyrinae strain 1JSPR-7]
TTGGAAGCTGGGCTGAACTTTGATGTTGCGGTGAGCCAATTGGAGTTTTTAGCACCGGAACTTGCGATAATGATTGAATA
CGGGGCGATGAAAGATAAATTGGGTTTGGAGCTTTTGCTATACTCGGAAGAGTGCTGGGGAATTTTTTTTGCAAAGGTTG
AACGTGCGATGCAGTGGATTCAGCCGATTGTTTTTATTTTTGTAGCGCTAATGATTATACTTTTATATGTGGCAATGTTA
TTACCAATTTATTCAAATATGGGAACAATGATGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(1-82)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Lactococcus lactis subsp. cremoris KW2

66.292

96.739

0.641
  comYB Streptococcus gordonii str. Challis substr. CH1

50.575

94.565

0.478
  comYB Streptococcus mutans UA159

51.765

92.391

0.478
  comYB Streptococcus mutans UA140

51.765

92.391

0.478
  comGB/cglB Streptococcus mitis SK321

49.425

94.565

0.467
  comGB/cglB Streptococcus pneumoniae Rx1

49.425

94.565

0.467
  comGB/cglB Streptococcus pneumoniae D39

49.425

94.565

0.467
  comGB/cglB Streptococcus pneumoniae R6

49.425

94.565

0.467
  comGB/cglB Streptococcus mitis NCTC 12261

49.425

94.565

0.467
  comGB/cglB Streptococcus pneumoniae TIGR4

49.425

94.565

0.467

Multiple sequence alignment