Detailed information NTG0317313

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: D7I46_RS08885
• Genome accession: NZ_CP032627
• Coordinates: 1909000..1909419 (-)
• Length: 139 a.a.
• NCBI ID: WP_120772579.1
• Uniprot ID: -
• Organism: Lactococcus allomyrinae strain 1JSPR-7
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1904000..1914419

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D7I46_RS08860 (D7I46_08860)	-	1904525..1905334 (-)	810	WP_120772574.1	metal ABC transporter permease	-
D7I46_RS08865 (D7I46_08865)	-	1905327..1906058 (-)	732	WP_120772575.1	metal ABC transporter ATP-binding protein	-
D7I46_RS08870 (D7I46_08870)	-	1906449..1907291 (-)	843	WP_120772576.1	metal ABC transporter solute-binding protein, Zn/Mn family	-
D7I46_RS08875 (D7I46_08875)	-	1907926..1908384 (-)	459	WP_120772577.1	zinc-dependent MarR family transcriptional regulator	-
D7I46_RS08880 (D7I46_08880)	comGG	1908675..1909022 (-)	348	WP_240424384.1	competence type IV pilus minor pilin ComGG	-
D7I46_RS08885 (D7I46_08885)	comGF	1909000..1909419 (-)	420	WP_120772579.1	competence type IV pilus minor pilin ComGF	Machinery gene
D7I46_RS08890 (D7I46_08890)	comGE	1909403..1909699 (-)	297	WP_120772580.1	competence type IV pilus minor pilin ComGE	Machinery gene
D7I46_RS08895 (D7I46_08895)	comGD	1909671..1910078 (-)	408	WP_240424386.1	competence type IV pilus minor pilin ComGD	Machinery gene
D7I46_RS08900 (D7I46_08900)	comGC	1910062..1910364 (-)	303	WP_120772581.1	competence type IV pilus major pilin ComGC	Machinery gene
D7I46_RS13665	comGB	1910369..1910647 (-)	279	WP_276116903.1	type II secretion system F family protein	Machinery gene
D7I46_RS08905 (D7I46_08905)	comGB	1910656..1911342 (-)	687	WP_276116904.1	type II secretion system F family protein	Machinery gene
D7I46_RS08910 (D7I46_08910)	comGA	1911296..1912279 (-)	984	WP_120772582.1	competence type IV pilus ATPase ComGA	Machinery gene
D7I46_RS08915 (D7I46_08915)	-	1912377..1912733 (-)	357	WP_120772583.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 139 a.a.
• Molecular weight: 15803.38 Da
• Isoelectric Point: 6.3289

>NTDB_id=317313 D7I46_RS08885 WP_120772579.1 1909000..1909419(-) (comGF) [Lactococcus allomyrinae strain 1JSPR-7]
MKLKIRAFTLLECLVALLAISGSVLVISGLTQLLQQQMAEEQTNQEKDWQIFCEQMRGELEGTKLDDVSQNFLYITKSKA
LRYGLVGNDFRKTDAQGKGYQPMLFGIKSCQMLDDMGLVKITITFDNGGKRTFVYKFEE

Nucleotide

• Length: 420 bp

>NTDB_id=317313 D7I46_RS08885 WP_120772579.1 1909000..1909419(-) (comGF) [Lactococcus allomyrinae strain 1JSPR-7]
TTGAAATTAAAAATTAGAGCGTTTACACTGCTAGAATGTCTAGTCGCTCTTCTTGCAATATCTGGTTCTGTGCTTGTTAT
TTCTGGACTTACTCAACTCCTTCAGCAACAAATGGCTGAAGAACAGACGAATCAAGAAAAAGATTGGCAAATCTTTTGCG
AACAAATGCGCGGAGAGTTAGAAGGGACAAAGCTTGATGATGTTTCTCAAAATTTTTTGTATATTACGAAAAGTAAAGCG
TTGAGATATGGTTTAGTAGGCAATGATTTTCGCAAAACAGATGCTCAGGGAAAGGGCTACCAGCCGATGCTTTTTGGGAT
AAAGTCTTGTCAAATGCTAGATGATATGGGATTGGTAAAAATCACGATAACTTTTGACAATGGGGGGAAGCGGACATTTG
TTTACAAATTTGAGGAGTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (35-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	66.906	100	0.669
comYF	Streptococcus mutans UA159	47.518	100	0.482
comYF	Streptococcus mutans UA140	46.809	100	0.475
comGF/cglF	Streptococcus mitis SK321	40.58	99.281	0.403
comGF/cglF	Streptococcus mitis NCTC 12261	39.13	99.281	0.388
comGF/cglF	Streptococcus pneumoniae Rx1	39.13	99.281	0.388
comGF/cglF	Streptococcus pneumoniae D39	39.13	99.281	0.388
comGF/cglF	Streptococcus pneumoniae R6	39.13	99.281	0.388
comGF/cglF	Streptococcus pneumoniae TIGR4	39.13	99.281	0.388