Detailed information
Bioinformatically predicted
Overview
| Name | comGC/cglC | Type | Machinery gene |
| Locus tag | D7D50_RS02035 | Genome accession | NZ_CP032620 |
| Coordinates | 382041..382358 (-) | Length | 105 a.a. |
| NCBI ID | WP_023027561.1 | Uniprot ID | - |
| Organism | Streptococcus koreensis strain KCOM 2890 (=JS71) | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 377041..387358
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7D50_RS02000 (D7D50_02000) | - | 377483..378157 (-) | 675 | WP_227877753.1 | CPBP family intramembrane glutamic endopeptidase | - |
| D7D50_RS02005 (D7D50_02005) | - | 378310..379506 (-) | 1197 | WP_120701350.1 | acetate kinase | - |
| D7D50_RS02010 (D7D50_02010) | comYH | 379555..380508 (-) | 954 | WP_120701351.1 | class I SAM-dependent methyltransferase | Machinery gene |
| D7D50_RS02015 (D7D50_02015) | comGG | 380540..380923 (-) | 384 | WP_418856565.1 | competence type IV pilus minor pilin ComGG | - |
| D7D50_RS02020 (D7D50_02020) | comGF/cglF | 380952..381404 (-) | 453 | WP_162614527.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| D7D50_RS02025 (D7D50_02025) | comGE | 381388..381681 (-) | 294 | WP_120701354.1 | competence type IV pilus minor pilin ComGE | - |
| D7D50_RS02030 (D7D50_02030) | comGD/cglD | 381647..382051 (-) | 405 | WP_120702309.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| D7D50_RS02035 (D7D50_02035) | comGC/cglC | 382041..382358 (-) | 318 | WP_023027561.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| D7D50_RS02040 (D7D50_02040) | comYB | 382355..383377 (-) | 1023 | WP_120701355.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| D7D50_RS02045 (D7D50_02045) | comYA | 383301..384260 (-) | 960 | WP_120701356.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| D7D50_RS02050 (D7D50_02050) | - | 384365..384742 (-) | 378 | WP_120701357.1 | DUF1033 family protein | - |
| D7D50_RS02060 (D7D50_02060) | - | 385102..386205 (-) | 1104 | WP_120701358.1 | glycosyl hydrolase family 8 | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11689.63 Da Isoelectric Point: 9.8248
>NTDB_id=317123 D7D50_RS02035 WP_023027561.1 382041..382358(-) (comGC/cglC) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MKSLRTLKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVTDTGNRAVVKVVESQAELYELNHQNEKASLSKLVAEGQ
ITQKQAEAYRAHYVKNAGDHRAVGD
MKSLRTLKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVTDTGNRAVVKVVESQAELYELNHQNEKASLSKLVAEGQ
ITQKQAEAYRAHYVKNAGDHRAVGD
Nucleotide
Download Length: 318 bp
>NTDB_id=317123 D7D50_RS02035 WP_023027561.1 382041..382358(-) (comGC/cglC) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGAAATCATTGCGTACACTCAAAGTAAAAGCTTTTACGCTGATTGAAATGCTAGTTGTTTTGCTCATTATCAGCGTTCT
TCTCTTGCTCTTTGTTCCGAACTTGACCAAGCAGAAAGATTCGGTAACGGATACAGGAAACCGAGCAGTTGTCAAAGTTG
TGGAGAGTCAGGCTGAGCTCTATGAACTCAATCATCAGAATGAAAAAGCCAGTCTTTCTAAGCTTGTCGCAGAAGGACAA
ATCACTCAAAAACAAGCAGAAGCCTACCGTGCTCACTATGTGAAGAATGCAGGTGATCACCGTGCGGTTGGAGATTAA
ATGAAATCATTGCGTACACTCAAAGTAAAAGCTTTTACGCTGATTGAAATGCTAGTTGTTTTGCTCATTATCAGCGTTCT
TCTCTTGCTCTTTGTTCCGAACTTGACCAAGCAGAAAGATTCGGTAACGGATACAGGAAACCGAGCAGTTGTCAAAGTTG
TGGAGAGTCAGGCTGAGCTCTATGAACTCAATCATCAGAATGAAAAAGCCAGTCTTTCTAAGCTTGTCGCAGAAGGACAA
ATCACTCAAAAACAAGCAGAAGCCTACCGTGCTCACTATGTGAAGAATGCAGGTGATCACCGTGCGGTTGGAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC/cglC | Streptococcus mitis SK321 |
69.524 |
100 |
0.695 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
68.571 |
100 |
0.686 |
| comGC/cglC | Streptococcus pneumoniae D39 |
66.667 |
100 |
0.667 |
| comGC/cglC | Streptococcus pneumoniae R6 |
66.667 |
100 |
0.667 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
66.667 |
100 |
0.667 |
| comYC | Streptococcus mutans UA159 |
66.667 |
100 |
0.667 |
| comYC | Streptococcus mutans UA140 |
66.667 |
100 |
0.667 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
66.667 |
100 |
0.667 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
70.526 |
90.476 |
0.638 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
61.224 |
93.333 |
0.571 |
| comYC | Streptococcus suis isolate S10 |
64.045 |
84.762 |
0.543 |
| comGC | Staphylococcus aureus MW2 |
51.282 |
74.286 |
0.381 |
| comGC | Staphylococcus aureus N315 |
51.282 |
74.286 |
0.381 |