Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | D7D50_RS02010 | Genome accession | NZ_CP032620 |
| Coordinates | 379555..380508 (-) | Length | 317 a.a. |
| NCBI ID | WP_120701351.1 | Uniprot ID | - |
| Organism | Streptococcus koreensis strain KCOM 2890 (=JS71) | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 374555..385508
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7D50_RS01990 (D7D50_01990) | - | 375047..376351 (-) | 1305 | WP_120701348.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| D7D50_RS01995 (D7D50_01995) | folP | 376368..377324 (-) | 957 | WP_165851222.1 | dihydropteroate synthase | - |
| D7D50_RS02000 (D7D50_02000) | - | 377483..378157 (-) | 675 | WP_227877753.1 | CPBP family intramembrane glutamic endopeptidase | - |
| D7D50_RS02005 (D7D50_02005) | - | 378310..379506 (-) | 1197 | WP_120701350.1 | acetate kinase | - |
| D7D50_RS02010 (D7D50_02010) | comYH | 379555..380508 (-) | 954 | WP_120701351.1 | class I SAM-dependent methyltransferase | Machinery gene |
| D7D50_RS02015 (D7D50_02015) | comGG | 380540..380923 (-) | 384 | WP_418856565.1 | competence type IV pilus minor pilin ComGG | - |
| D7D50_RS02020 (D7D50_02020) | comGF/cglF | 380952..381404 (-) | 453 | WP_162614527.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| D7D50_RS02025 (D7D50_02025) | comGE | 381388..381681 (-) | 294 | WP_120701354.1 | competence type IV pilus minor pilin ComGE | - |
| D7D50_RS02030 (D7D50_02030) | comGD/cglD | 381647..382051 (-) | 405 | WP_120702309.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| D7D50_RS02035 (D7D50_02035) | comGC/cglC | 382041..382358 (-) | 318 | WP_023027561.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| D7D50_RS02040 (D7D50_02040) | comYB | 382355..383377 (-) | 1023 | WP_120701355.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| D7D50_RS02045 (D7D50_02045) | comYA | 383301..384260 (-) | 960 | WP_120701356.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| D7D50_RS02050 (D7D50_02050) | - | 384365..384742 (-) | 378 | WP_120701357.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36022.95 Da Isoelectric Point: 4.4354
>NTDB_id=317120 D7D50_RS02010 WP_120701351.1 379555..380508(-) (comYH) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MNFEKIEKAYGYLLENTQTIQNDLQTNFYDALVEQNAIYLDGQTELTLVKENNQRLKDLNLNKEEWRRSFQYLLMKAAQT
EPLQANHQFTPDGIGFLLVFLVDQLASSDKVDVLEIGSGTGNLAQTLMNNCQRSLDYLGLEIDDLLIDLAASMAEVMKAD
VKFAQGDAVRPQVLKESDVIISDLPVGYYPDDAIASRYQVASPQGHTYAHHLLIEQSLKYLKPGGIAIFLAPNDLLTSEQ
SPLLKKWMQDHAQVLAMVTLPENLFRSANLAKTIFVLRKQEEAVVQPFVYPLTDLQNQEDVMKFRESFQNWNKESEI
MNFEKIEKAYGYLLENTQTIQNDLQTNFYDALVEQNAIYLDGQTELTLVKENNQRLKDLNLNKEEWRRSFQYLLMKAAQT
EPLQANHQFTPDGIGFLLVFLVDQLASSDKVDVLEIGSGTGNLAQTLMNNCQRSLDYLGLEIDDLLIDLAASMAEVMKAD
VKFAQGDAVRPQVLKESDVIISDLPVGYYPDDAIASRYQVASPQGHTYAHHLLIEQSLKYLKPGGIAIFLAPNDLLTSEQ
SPLLKKWMQDHAQVLAMVTLPENLFRSANLAKTIFVLRKQEEAVVQPFVYPLTDLQNQEDVMKFRESFQNWNKESEI
Nucleotide
Download Length: 954 bp
>NTDB_id=317120 D7D50_RS02010 WP_120701351.1 379555..380508(-) (comYH) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGAATTTCGAAAAAATTGAGAAAGCCTATGGCTATCTATTAGAAAATACCCAAACCATCCAAAATGATTTGCAGACCAA
CTTTTATGATGCTCTAGTGGAGCAGAATGCAATCTATCTGGATGGGCAGACTGAGTTGACTCTAGTGAAGGAAAACAACC
AGCGGCTGAAGGACTTGAATTTGAACAAAGAAGAGTGGCGTCGCTCCTTCCAATATCTTTTGATGAAGGCGGCCCAAACA
GAGCCCCTACAAGCCAATCACCAATTTACCCCAGATGGGATTGGATTTCTTCTGGTCTTTCTAGTGGATCAGTTGGCTAG
TTCTGATAAAGTAGATGTGCTAGAAATTGGAAGCGGAACAGGAAACTTAGCCCAAACCTTAATGAACAACTGCCAGCGCT
CGCTAGATTATTTGGGCTTGGAAATCGATGATCTGTTGATTGATCTTGCGGCCAGTATGGCAGAAGTGATGAAGGCGGAT
GTGAAGTTCGCCCAAGGTGATGCGGTTCGTCCACAGGTTTTGAAAGAGAGTGATGTGATTATCAGTGATTTACCTGTCGG
TTATTATCCAGATGATGCCATTGCAAGTCGTTATCAGGTCGCTTCCCCTCAGGGCCACACCTATGCCCATCATTTATTAA
TCGAACAATCGTTAAAATACTTAAAGCCGGGTGGTATCGCTATTTTTCTAGCTCCGAATGATCTGTTGACGAGCGAGCAG
AGCCCTCTCTTGAAAAAATGGATGCAGGATCATGCTCAGGTCTTGGCCATGGTTACCTTGCCAGAGAACCTCTTTCGATC
AGCTAATCTAGCAAAAACCATCTTTGTTTTGCGCAAGCAAGAAGAAGCAGTGGTCCAACCATTTGTCTATCCCTTAACCG
ATTTGCAAAATCAGGAAGACGTCATGAAATTCCGTGAAAGTTTTCAAAACTGGAATAAAGAAAGTGAAATTTAA
ATGAATTTCGAAAAAATTGAGAAAGCCTATGGCTATCTATTAGAAAATACCCAAACCATCCAAAATGATTTGCAGACCAA
CTTTTATGATGCTCTAGTGGAGCAGAATGCAATCTATCTGGATGGGCAGACTGAGTTGACTCTAGTGAAGGAAAACAACC
AGCGGCTGAAGGACTTGAATTTGAACAAAGAAGAGTGGCGTCGCTCCTTCCAATATCTTTTGATGAAGGCGGCCCAAACA
GAGCCCCTACAAGCCAATCACCAATTTACCCCAGATGGGATTGGATTTCTTCTGGTCTTTCTAGTGGATCAGTTGGCTAG
TTCTGATAAAGTAGATGTGCTAGAAATTGGAAGCGGAACAGGAAACTTAGCCCAAACCTTAATGAACAACTGCCAGCGCT
CGCTAGATTATTTGGGCTTGGAAATCGATGATCTGTTGATTGATCTTGCGGCCAGTATGGCAGAAGTGATGAAGGCGGAT
GTGAAGTTCGCCCAAGGTGATGCGGTTCGTCCACAGGTTTTGAAAGAGAGTGATGTGATTATCAGTGATTTACCTGTCGG
TTATTATCCAGATGATGCCATTGCAAGTCGTTATCAGGTCGCTTCCCCTCAGGGCCACACCTATGCCCATCATTTATTAA
TCGAACAATCGTTAAAATACTTAAAGCCGGGTGGTATCGCTATTTTTCTAGCTCCGAATGATCTGTTGACGAGCGAGCAG
AGCCCTCTCTTGAAAAAATGGATGCAGGATCATGCTCAGGTCTTGGCCATGGTTACCTTGCCAGAGAACCTCTTTCGATC
AGCTAATCTAGCAAAAACCATCTTTGTTTTGCGCAAGCAAGAAGAAGCAGTGGTCCAACCATTTGTCTATCCCTTAACCG
ATTTGCAAAATCAGGAAGACGTCATGAAATTCCGTGAAAGTTTTCAAAACTGGAATAAAGAAAGTGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
59.048 |
99.369 |
0.587 |
| comYH | Streptococcus mutans UA159 |
58.73 |
99.369 |
0.584 |